3E5R

crystal structure and functional analysis of glyceraldehyde- 3-phosphate dehydrogenase from oryza sativa

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: O-C
  • Int. Res.: 180
  • Norm. En. per Res.: -4.8281
• Hub Node: O(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
O-A	0.0	-5.2791	-93.0848	-98.3639	59	4	2	3663	0	21	17
O-B	-51.9086	-46.6148	-426.179	-524.7024	123	12	10	14759	2	28	26
O-C	-103.6968	-119.5159	-645.838	-869.0507	180	41	20	26292	18	46	32
A-B	-62.394	-92.55	-643.435	-798.379	178	40	20	25987	16	46	31
A-C	-51.0396	-48.1668	-421.855	-521.0614	123	11	10	14681	2	27	25
B-C	0.0	-14.7708	-88.2519	-103.0227	58	3	2	3681	3	23	15

Interface residues

• O-A: ARG293A, ARG293O, ASN207A, ASN207O, ASP282A, ASP282O, ASP287A, ASP287O, ASP291A, ASP291O, ASP50A, ASP50O, GLN55A, GLN55O, GLU280A, GLU280O, GLU281A, GLU281O, GLY290O, GLY54A, GLY54O, HIS53A, HIS53O, LEU283A, LEU283O, LYS48A, LYS48O, LYS57A, PHE206A, PHE206O, PHE288A, PHE288O, PRO238A, PRO238O, SER205A, SER205O, SER285A, SER285O, SER292O, THR286A, THR286O, THR51A, THR51O, TYR42A, TYR42O, TYR45A, TYR45O, TYR49A, TYR49O, VAL240A, VAL240O, VAL279A, VAL279O, VAL284A, VAL284O, VAL289A, VAL289O, VAL52A, VAL52O
• O-B: ALA182B, ALA182O, ALA185B, ALA185O, ALA203B, ALA203O, ALA204B, ALA204O, ARG13B, ARG13O, ARG16B, ARG16O, ARG199B, ARG199O, ARG202B, ARG202O, ARG20B, ARG20O, ARG236B, ARG236O, ASN207B, ASN207O, ASN318B, ASN318O, ASP191B, ASP191O, ASP197B, ASP197O, ASP241B, ASP241O, ASP35B, ASP35O, ASP41B, ASP41O, ASP50B, ASP50O, GLN187B, GLN187O, GLN55B, GLN55O, GLU319B, GLU319O, GLY12B, GLY12O, GLY192B, GLY192O, GLY200B, GLY200O, GLY201B, GLY201O, GLY54B, GLY54O, HIS181O, HIS53B, HIS53O, ILE14B, ILE183B, ILE183O, ILE209B, ILE209O, ILE38B, ILE38O, ILE63B, ILE63O, LYS188B, LYS188O, LYS196B, LYS196O, LYS48B, LYS48O, MET43B, MET43O, MET46B, MET46O, PHE11B, PHE11O, PHE206B, PHE206O, PHE37B, PHE37O, PRO193B, PRO193O, PRO238B, PRO238O, PRO36B, SER194B, SER194O, SER195B, SER195O, SER205B, SER205O, THR184B, THR184O, THR186B, THR186O, THR189B, THR189O, THR239B, THR239O, THR39B, THR39O, THR40B, THR40O, THR44B, THR44O, THR51B, THR51O, TRP198B, TRP198O, TYR42B, TYR42O, TYR45B, TYR45O, TYR49B, TYR49O, VAL190B, VAL190O, VAL237B, VAL237O, VAL240B, VAL240O, VAL52B, VAL52O
• O-C: ALA182C, ALA182O, ALA203C, ALA203O, ALA204C, ALA204O, ALA216C, ALA216O, ALA299C, ALA299O, ALA301C, ALA301O, ALA304C, ALA304O, ALA314C, ALA314O, ARG199C, ARG199O, ARG202C, ARG202O, ARG236C, ARG236O, ARG250C, ARG250O, ASN207C, ASN207O, ASN227C, ASN227O, ASN306C, ASN306O, ASN308C, ASN308O, ASN318C, ASP191C, ASP191O, ASP197C, ASP197O, ASP241C, ASP241O, ASP246C, ASP246O, ASP282C, ASP282O, ASP287C, ASP287O, ASP298C, ASP298O, GLN187C, GLN187O, GLU174C, GLU174O, GLU280C, GLU280O, GLU281C, GLU281O, GLY175C, GLY175O, GLY200C, GLY200O, GLY201C, GLY201O, GLY214C, GLY228C, GLY228O, GLY232C, GLY232O, GLY302C, GLY302O, HIS181C, HIS181O, ILE172C, ILE172O, ILE173C, ILE173O, ILE183C, ILE183O, ILE208C, ILE208O, ILE209C, ILE209O, ILE251C, ILE251O, ILE303C, ILE303O, LEU176C, LEU176O, LEU226C, LEU226O, LEU230C, LEU230O, LEU247C, LEU247O, LEU283C, LEU283O, LEU305C, LEU305O, LEU312C, LEU312O, LYS217C, LYS217O, LYS229C, LYS229O, LYS300C, LYS300O, LYS311C, LYS311O, MET177C, MET177O, MET233C, MET233O, PHE206C, PHE206O, PHE235C, PHE235O, PHE288C, PHE288O, PHE309C, PHE309O, PRO210C, PRO210O, PRO238C, PRO238O, SER205C, SER205O, SER211C, SER211O, SER212C, SER212O, SER234C, SER234O, SER243C, SER243O, SER285C, SER285O, THR178C, THR178O, THR179C, THR179O, THR213C, THR213O, THR231C, THR231O, THR239C, THR239O, THR248C, THR248O, THR286C, THR286O, TRP198C, TRP198O, TRP315C, TRP315O, TYR257C, TYR257O, TYR316C, TYR316O, VAL180C, VAL180O, VAL237C, VAL237O, VAL240C, VAL240O, VAL242C, VAL242O, VAL244C, VAL244O, VAL245C, VAL245O, VAL249C, VAL249O, VAL279C, VAL279O, VAL284C, VAL284O, VAL289C, VAL289O, VAL310C, VAL310O, VAL313C, VAL313O
• A-B: ALA182A, ALA182B, ALA203A, ALA203B, ALA204A, ALA204B, ALA216A, ALA216B, ALA299A, ALA299B, ALA301A, ALA301B, ALA304A, ALA304B, ALA314A, ALA314B, ARG199A, ARG199B, ARG202A, ARG202B, ARG236A, ARG236B, ARG250A, ARG250B, ASN207A, ASN207B, ASN227A, ASN227B, ASN306A, ASN306B, ASN308A, ASN308B, ASP191A, ASP191B, ASP197A, ASP197B, ASP241A, ASP241B, ASP246A, ASP246B, ASP282A, ASP282B, ASP287A, ASP287B, ASP298A, ASP298B, GLN187A, GLN187B, GLU174A, GLU174B, GLU280A, GLU280B, GLU281A, GLU281B, GLY175A, GLY175B, GLY200A, GLY200B, GLY201A, GLY201B, GLY214A, GLY214B, GLY228A, GLY228B, GLY232A, GLY232B, GLY302A, GLY302B, HIS181A, HIS181B, ILE172A, ILE172B, ILE173A, ILE173B, ILE183A, ILE183B, ILE208A, ILE208B, ILE209A, ILE209B, ILE251A, ILE251B, ILE303A, ILE303B, LEU176A, LEU176B, LEU226A, LEU226B, LEU230A, LEU230B, LEU247A, LEU247B, LEU283A, LEU283B, LEU305A, LEU305B, LEU312A, LEU312B, LYS217A, LYS217B, LYS229A, LYS229B, LYS300A, LYS300B, LYS311A, LYS311B, MET177A, MET177B, MET233A, MET233B, PHE206A, PHE206B, PHE235A, PHE235B, PHE288A, PHE288B, PHE309A, PHE309B, PRO210A, PRO210B, PRO238A, PRO238B, SER205A, SER205B, SER211A, SER211B, SER212A, SER212B, SER234A, SER234B, SER243A, SER243B, SER285A, SER285B, THR178A, THR178B, THR179A, THR179B, THR213A, THR213B, THR231A, THR231B, THR239A, THR239B, THR248A, THR248B, THR286A, THR286B, TRP198A, TRP198B, TRP315A, TRP315B, TYR316A, TYR316B, VAL180A, VAL180B, VAL237A, VAL237B, VAL240A, VAL240B, VAL242A, VAL242B, VAL244A, VAL244B, VAL245A, VAL245B, VAL249A, VAL249B, VAL279A, VAL279B, VAL284A, VAL284B, VAL289A, VAL289B, VAL310A, VAL310B, VAL313A, VAL313B
• A-C: ALA182A, ALA182C, ALA185A, ALA185C, ALA203A, ALA203C, ALA204A, ALA204C, ARG13A, ARG13C, ARG16A, ARG16C, ARG199A, ARG199C, ARG202A, ARG202C, ARG20A, ARG20C, ARG236A, ARG236C, ASN207A, ASN207C, ASN318A, ASN318C, ASP191A, ASP191C, ASP197A, ASP197C, ASP241A, ASP241C, ASP35A, ASP35C, ASP41A, ASP41C, ASP50A, ASP50C, GLN187A, GLN187C, GLN55A, GLN55C, GLU319A, GLU319C, GLY12A, GLY12C, GLY192A, GLY192C, GLY200A, GLY200C, GLY201A, GLY201C, GLY54A, GLY54C, HIS181C, HIS53A, HIS53C, ILE14A, ILE183A, ILE183C, ILE209A, ILE209C, ILE38A, ILE38C, ILE63A, ILE63C, LEU17C, LYS188A, LYS188C, LYS196A, LYS196C, LYS48A, LYS48C, MET43A, MET43C, MET46A, MET46C, PHE11A, PHE11C, PHE206A, PHE206C, PHE37A, PHE37C, PRO193A, PRO193C, PRO238A, PRO238C, SER194A, SER194C, SER195A, SER195C, SER205A, SER205C, THR184A, THR184C, THR186A, THR186C, THR189A, THR189C, THR239A, THR239C, THR39A, THR39C, THR40A, THR40C, THR44A, THR44C, THR51A, THR51C, TRP198A, TRP198C, TYR42A, TYR42C, TYR45A, TYR45C, TYR49A, TYR49C, VAL190A, VAL190C, VAL237A, VAL237C, VAL240A, VAL240C, VAL52A, VAL52C
• B-C: ASN207B, ASN207C, ASP282B, ASP282C, ASP287B, ASP287C, ASP291C, ASP50B, ASP50C, GLN55B, GLN55C, GLU280B, GLU280C, GLU281B, GLU281C, GLY290C, GLY54B, GLY54C, HIS53B, HIS53C, LEU283B, LEU283C, LYS300B, LYS48B, LYS48C, LYS57B, PHE206B, PHE206C, PHE288B, PHE288C, PRO238B, PRO238C, SER205B, SER205C, SER285B, SER285C, THR286B, THR286C, THR44B, THR44C, THR51B, THR51C, TYR42B, TYR42C, TYR45B, TYR45C, TYR49B, TYR49C, VAL240B, VAL240C, VAL279B, VAL279C, VAL284B, VAL284C, VAL289B, VAL289C, VAL52B, VAL52C