3E1B

structure of the 50s subunit of e. coli ribosome in pre- accommodation state

• Total interactions analyzed: 496
• Total true interactions: 31
• Strongest Interaction:
  • Chains: D-Y
  • Int. Res.: 11
  • Norm. En. per Res.: -4.8779
• Hub Node: E(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
C-F	-9.7724	2.9428	-59.2693	-66.0989	35	1	2	2452	0	3	12
D-I	-13.6283	32.3443	-56.1711	-37.4551	32	4	3	2506	4	18	15
D-Y	-8.2524	-31.1765	-14.2279	-53.6568	11	2	0	556	1	6	2
E-J	0.0	0.0	-0.0981	-0.0981	3	0	0	42	0	0	3
E-K	0.0	0.0	-0.089	-0.089	4	0	0	28	0	0	4
E-W	-14.2778	-9.8737	-125.473	-149.6245	57	4	1	6045	1	7	33
E-1	-14.4255	-15.1395	-104.333	-133.898	47	2	4	4029	2	15	11
F-P	0.0	0.0	-0.0041	-0.0041	2	0	0	3	0	0	0
F-X	0.0	1.9773	-3.078	-1.1007	7	0	0	282	0	1	4
G-L	0.0	0.0	-0.0161	-0.0161	3	0	0	10	0	0	0
G-T	0.0	-5.6462	-85.5696	-91.2158	45	2	2	3926	0	17	22
G-Y	0.0	6.504	-2.3502	4.1538	8	0	0	291	0	0	7
H-P	-10.6923	0.9578	-57.9051	-67.6397	18	1	3	2118	0	5	11
I-Y	-9.6259	-61.8063	-89.3902	-160.8224	47	2	2	3721	4	13	12
J-K	-17.7615	-11.0243	-86.3829	-115.1687	66	1	2	4698	2	12	29
J-T	0.0	0.0	-0.1444	-0.1444	7	0	0	76	0	0	5
J-1	0.0	0.0	-0.073	-0.073	3	0	0	36	0	0	1
J-6	-6.9381	-3.7329	-90.4842	-101.1553	41	3	3	4070	0	7	23
K-6	0.0	0.0	-11.4401	-11.4401	11	0	0	565	0	0	0
L-T	0.0	-13.5357	-85.4761	-99.0118	45	2	7	3790	0	9	7
L-V	0.0	0.0	-0.4153	-0.4153	2	0	0	80	0	0	1
L-1	0.0	0.0	-3.2659	-3.2659	6	0	0	177	0	0	1
M-Q	-4.3307	-31.141	-141.105	-176.5767	59	1	8	5903	2	9	15
M-V	0.0	0.0	-0.6931	-0.6931	4	0	0	68	0	0	4
P-W	0.0	0.0	-0.0526	-0.0526	2	0	0	17	0	0	0
S-4	-11.5048	8.6537	-52.561	-55.4121	27	2	0	2001	0	5	12
T-1	0.0	0.0	-0.0023	-0.0023	2	0	0	3	0	0	0
U-W	0.0	0.0	-1.9833	-1.9833	9	0	0	264	0	0	4
V-1	0.0	0.0	-0.3556	-0.3556	3	0	0	42	0	0	0
X-3	0.0	0.0	-0.0372	-0.0372	3	0	0	15	0	3	1
Y-6	0.0	3.6271	-11.8674	-8.2403	13	0	0	768	0	0	5

Interface residues

• C-F: ALA35F, ALA52C, ALA54C, ARG38F, ARG79C, ASP76C, GLN51C, GLN75C, GLN78C, GLN97F, GLY37F, HIS80C, LEU86C, LYS127F, LYS133F, LYS34F, LYS53C, LYS83C, LYS85C, MET136F, PHE130F, PHE56C, PRO125F, PRO81C, PRO84C, THR129F, THR132F, THR134F, THR24F, TYR57C, TYR82C, VAL131F, VAL135F, VAL36F, VAL77C
• D-I: ARG105D, ARG64D, ARG70D, ARG71D, ARG71I, ARG78D, ASP73D, ASP80D, GLN74I, GLU106D, GLU33I, GLU43I, GLU70I, GLY34I, GLY68I, GLY74D, GLY81D, ILE77D, LYS36I, LYS37I, LYS66D, PHE73I, PHE79D, PRO102D, PRO72D, SER35I, SER75D, THR75I, VAL122D, VAL69I, VAL72I, VAL76D
• D-Y: ARG70D, ASP18Y, ASP73D, GLU17Y, GLY19Y, GLY74D, PHE15Y, SER21Y, SER75D, VAL20Y, VAL76D
• E-J: ARG5J, LYS29E, VAL3J
• E-K: GLY32E, HIS35E, LYS85K, TYR83K
• E-W: ALA10W, ALA26W, ALA64W, ALA72E, ALA75E, ALA9W, ARG12W, ARG29W, ARG44W, ARG59E, ARG60E, ARG69E, ARG7W, ASN27W, ASP53W, GLU51E, GLU76E, GLY52E, GLY52W, GLY53E, GLY55W, GLY65E, GLY8W, HIS23W, HIS25W, HIS30W, HIS42W, ILE3W, ILE58W, LEU43W, LEU54W, LEU56W, LEU57E, LEU61E, LYS11W, LYS14W, LYS22W, LYS24W, LYS4W, LYS51W, LYS63E, MET55E, PHE13W, PHE50E, PHE64E, PHE66E, PRO45W, PRO56E, PRO62E, SER50W, SER68E, THR5W, THR67E, THR74E, TYR58E, VAL57W, VAL6W
• E-1: ALA1421, ALA15E, ALA1821, ALA261, ALA9E, ARG1141, ARG18E, ARG2E, ARG48E, ASN241, ASP1161, ASP1841, GLN1151, GLN301, GLU10E, GLU1111, GLU251, GLY11E, GLY16E, GLY20E, HIS291, ILE1811, LEU1121, LEU1801, LEU19E, LEU271, LYS13E, LYS14E, LYS17E, LYS1851, LYS29E, MET1001, MET1E, PHE1831, PHE851, PRO1771, PRO8E, SER12E, SER1791, THR841, VAL1461, VAL1671, VAL1781, VAL281, VAL311, VAL321, VAL331
• F-P: LYS84F, SER8P
• F-X: ARG114F, GLU115F, LEU10X, LEU124F, LYS8X, PHE117F, VAL7X
• G-L: ALA104G, ASN40L, GLY105G
• G-T: ALA104G, ALA111G, ALA122G, ALA124G, ALA44T, ALA55T, ARG103G, ARG118G, ARG39T, ARG49T, ARG51T, ARG96G, ASP106G, ASP45T, CYS100G, GLU114G, GLU120G, GLY101G, GLY105G, GLY46T, GLY50T, HIS37T, HIS40T, HIS41T, ILE113G, ILE33G, ILE34G, ILE42T, ILE54T, ILE97G, LEU38T, LEU98G, LYS121G, LYS35G, LYS52T, LYS99G, MET110G, PHE102G, PRO109G, THR36G, THR43T, TYR112G, TYR47T, TYR48T, VAL53T
• G-Y: ARG2G, ARG4G, GLY117Y, HIS3G, LYS114Y, LYS116Y, LYS123Y, PHE118Y
• H-P: ALA83P, ARG15H, ARG16H, ARG76P, ASN43H, ASN75P, GLN19H, GLU20H, GLU84P, GLY22H, ILE79P, LEU18H, LEU21H, LYS17H, LYS74P, LYS77P, PHE44P, PHE78P
• I-Y: ALA57I, ARG13Y, ARG179Y, ARG184Y, ASN185Y, ASN2I, ASP181Y, ASP18Y, GLN11I, GLN6I, GLN74I, GLN9I, GLU10I, GLU17Y, GLU183Y, GLU28Y, GLU33I, GLU8I, GLY10Y, GLY19Y, HIS55I, HIS76I, ILE14Y, ILE27Y, ILE3I, ILE4I, LEU186Y, LEU188Y, LEU7I, LYS5I, LYS8Y, MET11Y, PHE15Y, PHE58I, PRO78I, SER1I, SER56I, SER77I, THR12Y, THR16Y, THR25Y, THR59I, THR75I, VAL29Y, VAL60I, VAL80I, VAL9Y
• J-K: ALA104J, ALA107J, ALA37J, ALA3K, ALA41J, ALA45J, ALA85J, ALA95J, ALA98J, ARG12J, ARG13K, ARG78K, ARG79K, ARG80K, ARG84K, ARG91J, ASP101J, ASP55K, ASP90J, ASP96J, GLN11K, GLN36J, GLN43J, GLN6K, GLN86K, GLN87K, GLU45K, GLU88J, GLY42J, GLY50K, HIS12K, HIS82K, ILE39J, ILE49K, ILE64J, ILE89J, ILE8J, ILE93J, ILE97J, LEU108J, LEU82J, LEU94J, LYS10K, LYS111J, LYS40J, LYS48K, LYS81K, LYS85K, LYS92J, PHE105J, PHE35J, PHE53K, PHE5K, PHE77K, PRO52K, SER86J, TRP60J, TYR44J, TYR46J, TYR83K, VAL14K, VAL38J, VAL4K, VAL51K, VAL54K, VAL87J
• J-T: ALA26J, ARG9T, GLY25J, LYS6T, PRO7T, SER10T, TYR24J
• J-1: ALA1J, ARG2J, LYS471
• J-6: ALA426, ALA62J, ALA66, ALA66J, ALA67J, ARG346, ARG376, ARG52J, ARG54J, ARG57J, ARG63J, ARG69J, ASN65J, ASP96J, GLN55J, GLN58J, GLN70J, GLU436, GLY386, HIS406, HIS476, ILE61J, ILE64J, ILE93J, LEU59J, LYS102J, LYS126, LYS26, LYS396, LYS416, PHE46, PHE56J, PRO466, THR36, THR456, THR56, TRP60J, TYR166, TYR446, VAL486, VAL99J
• K-6: GLN11K, GLN18K, GLU16K, GLY17K, HIS12K, LYS26, MET16, THR19K, THR36, VAL14K, VAL20K
• L-T: ALA20T, ALA21L, ALA23T, ALA43L, ALA44L, ARG15T, ARG16T, ARG18L, ARG39T, ASN40L, ASP19T, ASP22L, ASP34L, GLN15L, GLN31L, GLU35T, GLY13T, GLY34T, HIS37T, HIS40T, ILE24L, ILE35L, LEU19L, LEU21T, LEU23L, LEU27T, LEU33L, LEU36L, LEU38T, LYS16L, LYS28L, LYS36T, LYS41L, MET14T, SER26T, SER28T, THR22T, THR25T, THR37L, THR39L, THR43T, THR8T, TYR38L, VAL20L, VAL24T
• L-V: ARG3V, LYS90L
• L-1: ALA681, ARG671, ARG92L, GLY641, GLY661, THR651
• M-Q: ALA13M, ALA32Q, ALA33Q, ALA35M, ALA46M, ALA51Q, ALA99M, ARG12M, ARG23Q, ARG29Q, ARG3M, ARG48Q, ARG6M, ASN15Q, ASN20Q, ASN27Q, GLN25Q, GLN31Q, GLN48M, GLU13Q, GLU17Q, GLU24Q, GLU4M, GLU52M, GLU5M, GLY97M, GLY98M, HIS15M, ILE2M, LEU11M, LEU14Q, LEU18Q, LEU19Q, LEU21Q, LEU22Q, LEU28Q, LEU32M, LEU43Q, LEU50M, LEU7M, LEU8M, LYS33M, LYS49M, LYS54Q, LYS9M, MET30Q, PHE26Q, PHE51M, PHE95M, PRO14M, SER17M, THR16Q, VAL10M, VAL16M, VAL34M, VAL47M, VAL50Q, VAL53M, VAL96M
• M-V: ARG77M, LYS46V, LYS64M, VAL62M
• P-W: ARG38P, ARG39W
• S-4: ALA394, ALA52S, ARG274, ARG49S, ARG56S, ARG59S, ASN434, ASP35S, ASP58S, GLN24, GLN334, GLU454, GLY55S, ILE444, LYS414, LYS424, LYS62S, MET14, PHE464, PHE60S, PRO324, PRO384, THR404, THR53S, VAL34, VAL36S, VAL57S
• T-1: ARG671, GLN4T
• U-W: LEU10U, LEU32W, LYS34W, LYS40W, LYS9U, PHE19U, THR21U, THR22U, THR23U
• V-1: ARG33V, ARG34V, THR531
• X-3: ALA29X, GLU30X, LYS1763
• Y-6: GLY158Y, GLY796, GLY826, GLY836, HIS806, ILE816, ILE846, LYS154Y, LYS157Y, LYS159Y, MET161Y, PHE156Y, VAL155Y