3DXA
crystal structure of the dm1 tcr in complex with hla-b*4405 and decamer ebv antigen
Total interactions analyzed 105
Total true interactions 34
Strongest Interaction Chains C-E
Int. Res. 25
Norm. En. per Res. -6.797
Hub Node A(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -48.8935 -89.9523 -343.489 -482.3348 124 23 2 12677 5 45 40
A-C -52.5491 -42.6372 -256.935 -352.1213 93 30 5 9980 5 25 26
A-D -11.0321 -45.8504 -81.4921 -138.3746 47 7 1 3569 3 15 13
A-E -18.7603 -16.8462 -63.8736 -99.48 50 2 0 3064 2 25 19
A-I 0.0 0.0 -0.2093 -0.2093 6 0 0 65 0 2 2
A-J 0.0 12.8326 -61.8427 -49.0101 31 5 0 2680 0 7 13
A-K 0.0 23.2509 -43.014 -19.7631 53 0 0 2187 0 23 20
C-D 0.0 0.0 -38.8978 -38.8978 18 1 1 1548 0 2 3
C-E -14.4255 -83.1743 -72.3246 -169.9244 25 6 1 2270 7 8 8
C-J 0.0 0.0 -0.0166 -0.0166 5 0 0 13 0 0 2
D-E -29.1268 -0.9824 202.995 172.8859 201 27 12 21942 6 42 41
D-F 0.0 0.0 -0.2003 -0.2003 5 0 0 63 0 2 1
D-K -12.8495 -4.9578 -64.9719 -82.7792 44 4 0 3345 1 16 18
D-N 0.0 0.0 -3.1916 -3.1916 20 0 0 342 0 8 7
E-F 0.0 12.4781 -45.6624 -33.1843 30 1 0 2170 0 7 11
E-H 0.0 0.0 -0.0216 -0.0216 5 0 0 17 0 0 2
E-J -7.9567 -49.8106 -100.671 -158.4383 68 5 0 4574 11 32 26
E-N 0.0 0.0 -0.0309 -0.0309 3 0 0 16 0 0 0
F-G -47.881 -126.9597 -358.841 -533.6818 124 21 3 13084 6 51 43
F-H -44.7104 -38.6875 -266.525 -349.9229 90 34 5 9890 5 24 26
F-I -7.0287 0.0 -86.3397 -93.3684 50 10 1 3637 3 15 12
F-J -14.3189 -11.9851 -81.4174 -107.7214 51 5 0 3428 1 26 20
F-N 0.0 1.258 0.0 1.258 2 0 0 0 0 3 5
H-I 0.0 0.0 -43.5011 -43.5011 18 2 1 1669 0 2 3
H-J -8.9771 -82.8513 -65.1699 -156.9983 25 7 0 2233 6 8 8
I-J -28.0238 2.2557 207.361 181.593 204 38 12 21932 6 42 42
I-N 0.0 0.0 -0.2307 -0.2307 13 0 0 77 0 3 4
K-L -33.468 -82.2218 -307.376 -423.0657 116 17 2 11584 4 44 37
K-M -37.9684 -34.9349 -283.708 -356.6114 93 24 5 10273 5 25 29
K-N -4.8388 0.0 -70.5205 -75.3593 46 2 1 3187 3 12 12
K-O -26.1601 -10.2921 -80.0219 -116.4741 50 6 0 3478 2 26 21
M-N 0.0 0.0 -34.0696 -34.0696 18 0 1 1391 0 2 2
M-O -9.1371 -80.1592 -61.5547 -150.851 25 6 0 2231 6 8 8
N-O -33.2793 -0.773 86.9417 52.8894 199 34 12 22015 6 43 42