3DWT

structure of cabbcii-10 nanobody

• Total interactions analyzed: 28
• Total true interactions: 12
• Strongest Interaction:
  • Chains: C-G
  • Int. Res.: 43
  • Norm. En. per Res.: -2.6222
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-13.8495	-13.8495	23	2	0	1300	0	0	0
A-C	0.0	0.0	-65.5754	-65.5754	30	5	1	2247	0	0	0
A-D	-3.913	66.8714	-154.327	-91.3686	58	16	3	5963	0	3	13
A-H	-28.7834	0.0	-83.7735	-112.5569	44	12	0	3300	0	2	3
B-C	-6.6798	73.3514	-142.818	-76.1464	54	12	3	5570	0	3	12
B-D	-13.5231	0.0	-57.3315	-70.8546	30	8	1	2186	0	0	0
B-F	-10.2662	0.0	-86.355	-96.6212	44	15	0	3559	0	2	3
C-D	0.0	0.0	-1.1375	-1.1375	8	0	0	94	0	0	0
C-G	-21.5129	0.0	-91.2417	-112.7546	43	10	0	3418	0	1	3
D-E	-7.3085	0.0	-91.4172	-98.7257	44	12	0	3555	0	1	3
E-F	0.0	0.0	-37.2582	-37.2582	24	12	0	1892	0	0	0
G-H	0.0	0.0	-30.1657	-30.1657	24	8	0	1497	0	0	0

Interface residues

• A-B: ARG103A, ARG103B, ASN77A, ASN77B, GLY104A, GLY104B, GLY58A, GLY58B, MET57A, MET57B, PHE35B, SER31A, SER31B, SER33A, SER33B, SER56A, SER56B, THR34A, THR34B, TYR105A, TYR105B, TYR32A, TYR32B
• A-C: ALA55A, ALA55C, ARG108A, ARG75C, ASN77A, ASN77C, GLY58A, GLY58C, GLY59A, GLY59C, ILE54A, ILE54C, LEU60A, LEU60C, MET107A, MET107C, MET57A, MET57C, PHE106A, PHE106C, SER33A, SER33C, SER56A, SER56C, THR61A, THR61C, TYR105A, TYR105C, TYR62A, TYR62C
• A-D: ALA101A, ALA101D, ALA50A, ALA55D, ARG103A, ARG103D, ARG108A, ARG108D, ARG116A, ARG116D, ARG48A, ASN114A, ASN114D, GLU49A, GLY104A, GLY104D, HIS113A, HIS113D, LEU109A, LEU109D, LEU60D, MET107A, MET107D, MET57A, MET57D, PHE106A, PHE106D, PHE115A, PHE115D, PHE35A, PHE35D, PHE40A, PRO110A, PRO110D, SER111A, SER111D, SER112A, SER112D, SER28D, SER31A, SER31D, SER33D, SER36A, SER36D, SER56A, SER56D, THR34A, THR34D, TRP118A, TRP118D, TYR105A, TYR105D, TYR117A, TYR117D, TYR62D, VAL102A, VAL102D, VAL2A
• A-H: ALA14A, ALA14H, ARG19A, ARG19H, ARG70A, ARG70H, ASN87A, ASN87H, ASN88A, ASN88H, GLN13A, GLN13H, GLN85A, GLN85H, GLY15A, GLY15H, GLY16A, GLY16H, GLY69H, GLY8A, GLY9A, LEU18A, LEU18H, LEU20A, LEU84A, LEU89A, LEU89H, LYS79A, LYS90H, MET86A, MET86H, PRO91H, SER127H, SER128H, SER17A, SER17H, SER21A, SER7A, THR72A, THR72H, THR83A, VAL126H, VAL12A, VAL12H
• B-C: ALA101B, ALA101C, ALA50B, ALA55C, ARG103B, ARG103C, ARG108B, ARG108C, ARG116B, ARG116C, ARG48B, ASN114B, ASN114C, GLY104B, GLY104C, HIS113B, HIS113C, LEU109B, LEU109C, MET107B, MET107C, MET57B, MET57C, PHE106B, PHE106C, PHE115B, PHE115C, PHE35B, PHE35C, PHE40B, PRO110B, PRO110C, SER111B, SER111C, SER112B, SER112C, SER28B, SER31C, SER33C, SER36B, SER56B, SER56C, THR34B, THR34C, TRP118B, TRP118C, TYR105B, TYR105C, TYR117B, TYR117C, TYR62C, VAL102B, VAL102C, VAL2B
• B-D: ALA55B, ALA55D, ARG108B, ARG75D, ASN77B, ASN77D, GLY58B, GLY58D, GLY59B, GLY59D, ILE54B, ILE54D, LEU60B, LEU60D, MET107B, MET107D, MET57B, MET57D, PHE106B, PHE106D, SER33B, SER33D, SER56B, SER56D, THR61B, THR61D, TYR105B, TYR105D, TYR62B, TYR62D
• B-F: ALA14B, ALA14F, ARG19B, ARG19F, ARG70B, ARG70F, ASN87B, ASN87F, ASN88B, ASN88F, GLN13B, GLN13F, GLN85B, GLN85F, GLY15B, GLY15F, GLY16B, GLY16F, GLY69F, GLY8B, GLY9B, LEU18B, LEU18F, LEU20B, LEU84B, LEU89B, LEU89F, LYS79B, LYS90F, MET86B, MET86F, PRO91F, SER127F, SER128F, SER17B, SER17F, SER21B, SER7B, THR72B, THR72F, THR83B, VAL126F, VAL12B, VAL12F
• C-D: MET57C, MET57D, SER31C, SER31D, SER33C, SER33D, THR34C, THR34D
• C-G: ALA14C, ALA14G, ARG19C, ARG19G, ARG70G, ASN87C, ASN87G, ASN88C, ASN88G, GLN13C, GLN13G, GLN85C, GLN85G, GLY15C, GLY15G, GLY16C, GLY16G, GLY69G, GLY8C, GLY9C, LEU18C, LEU18G, LEU20C, LEU84C, LEU89C, LEU89G, LYS79C, LYS90G, MET86C, MET86G, PRO91G, SER127G, SER128G, SER17C, SER17G, SER21C, SER7C, THR72C, THR72G, THR83C, VAL126G, VAL12C, VAL12G
• D-E: ALA14D, ALA14E, ARG19D, ARG19E, ARG70D, ARG70E, ASN87D, ASN87E, ASN88D, ASN88E, GLN13D, GLN13E, GLN85D, GLN85E, GLY10D, GLY15D, GLY15E, GLY16D, GLY16E, GLY69E, GLY8D, GLY9D, LEU18D, LEU18E, LEU20D, LEU84D, LEU89D, LEU89E, LYS90E, MET86D, MET86E, PRO91E, SER127E, SER128E, SER17D, SER17E, SER21D, SER7D, THR72D, THR72E, THR83D, VAL126E, VAL12D, VAL12E
• E-F: ALA55E, ALA55F, ARG108E, ARG108F, GLY58E, GLY58F, GLY59E, GLY59F, LEU60E, LEU60F, MET107E, MET107F, MET57E, MET57F, PHE106E, PHE106F, SER56E, SER56F, THR61E, THR61F, TYR105E, TYR105F, TYR62E, TYR62F
• G-H: ALA55G, ALA55H, ARG108G, ARG108H, GLY58G, GLY58H, GLY59G, GLY59H, LEU60G, LEU60H, MET107G, MET107H, MET57G, MET57H, PHE106G, PHE106H, SER56G, SER56H, THR61G, THR61H, TYR105G, TYR105H, TYR62G, TYR62H