3DPR

human rhinovirus 2 bound to a concatamer of the vldl receptor module v3

• Total interactions analyzed: 10
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 175
  • Norm. En. per Res.: -4.6807
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-94.5575	-79.4906	-645.083	-819.1311	175	52	12	23002	5	52	26
A-C	-263.0327	-123.2312	-938.484	-1324.7479	308	78	31	42075	11	59	47
A-D	-23.9514	1.055	-68.4033	-91.2997	39	3	2	2882	0	11	7
A-E	0.0	-24.9734	-64.0701	-89.0435	31	2	0	2329	2	19	9
B-C	-81.1321	-25.8581	-410.767	-517.7572	155	27	5	17367	1	8	8
C-D	-15.631	0.0	-104.701	-120.332	33	7	0	3142	0	3	3

Interface residues

• A-B: ALA133B, ALA135B, ALA188A, ALA190A, ALA200B, ALA208A, ALA209B, ALA252A, ALA258A, ALA273A, ALA29B, ALA31B, ALA34B, ALA36A, ALA37A, ARG108A, ARG109A, ARG118A, ARG195B, ARG216B, ARG248A, ARG251A, ARG257A, ARG260A, ARG260B, ARG268A, ASN139B, ASN141B, ASN145B, ASN175B, ASN183B, ASN193B, ASN197B, ASN198B, ASN204A, ASN208B, ASN209A, ASN211A, ASN219B, ASN220B, ASN262A, ASN30B, ASP165B, ASP177B, ASP196A, ASP199A, ASP202A, ASP213B, ASP267A, ASP35A, ASP46B, ASP84B, CYS246A, GLN102A, GLN131B, GLN167B, GLN190B, GLN201A, GLN203A, GLN261B, GLN271A, GLU112A, GLU129B, GLU170B, GLU171B, GLU200A, GLU254A, GLU266A, GLU38A, GLY138B, GLY143B, GLY178B, GLY182B, GLY197A, GLY206A, GLY36B, GLY40A, HIS130B, HIS137B, HIS148B, HIS189B, HIS218B, HIS259A, HIS41A, ILE123B, ILE127B, ILE132B, ILE184B, ILE186B, ILE192B, ILE202B, ILE265A, ILE270A, ILE274A, ILE32B, LEU113A, LEU122B, LEU136B, LEU166B, LEU174B, LEU180B, LEU181B, LEU194B, LEU253A, LEU82B, LYS264A, LYS81B, MET193A, MET212B, PHE114A, PHE176B, PHE184A, PHE187B, PHE191B, PHE194A, PHE263A, PRO128B, PRO168B, PRO188B, PRO205B, PRO211B, PRO247A, PRO249A, PRO250A, PRO83B, SER134B, SER186A, SER189A, SER196B, SER199B, SER214B, SER217B, SER222B, THR115A, THR117A, THR121B, THR147B, THR169B, THR179B, THR185B, THR201B, THR207A, THR210A, THR256A, THR261A, THR272A, THR39A, THR42A, TRP173B, TRP221B, TRP245A, TRP79B, TRP80B, TYR100B, TYR116A, TYR144B, TYR146B, TYR172B, TYR191A, TYR192A, TYR195A, TYR198A, TYR205A, TYR206B, TYR255A, TYR35B, VAL124B, VAL140B, VAL142B, VAL187A, VAL207B, VAL210B, VAL28B, VAL33B, VAL37B
• A-C: ALA105A, ALA167A, ALA176A, ALA188A, ALA190A, ALA208A, ALA223C, ALA234C, ALA236C, ALA244A, ALA24C, ALA252A, ALA258A, ALA273A, ALA283A, ALA31A, ALA33A, ALA36A, ALA37A, ALA95C, ALA98A, ARG108A, ARG109A, ARG114C, ARG118A, ARG179A, ARG221C, ARG224C, ARG248A, ARG251A, ARG257A, ARG260A, ARG268A, ARG277A, ARG54A, ARG62A, ARG73A, ARG86C, ASN100A, ASN166A, ASN19A, ASN21A, ASN227C, ASN42C, ASN56C, ASN57C, ASN63C, ASP120A, ASP156C, ASP17C, ASP18C, ASP217C, ASP225C, ASP35A, ASP49A, ASP50C, ASP59C, ASP63A, ASP80C, CYS120C, CYS190C, CYS215C, CYS219C, CYS23C, CYS246A, CYS47C, CYS76A, GLN102A, GLN106A, GLN12C, GLN160C, GLN20C, GLN231C, GLN237C, GLN271A, GLN46A, GLN48C, GLN57A, GLN60A, GLN92C, GLU101C, GLU103A, GLU112A, GLU122A, GLU140C, GLU254A, GLU33C, GLU38A, GLU39C, GLU45C, GLU48A, GLU64A, GLU68A, GLU79A, GLY100C, GLY111C, GLY11C, GLY158C, GLY214C, GLY233C, GLY38C, GLY40A, GLY72A, GLY75A, GLY9C, HIS108C, HIS152C, HIS174C, HIS229C, HIS237A, HIS241A, HIS259A, HIS29C, HIS41A, HIS78A, ILE102C, ILE107A, ILE123A, ILE154C, ILE163C, ILE170C, ILE188C, ILE20A, ILE235A, ILE235C, ILE270A, ILE274A, ILE279A, ILE280A, ILE34C, ILE36C, ILE46C, ILE51A, ILE55C, ILE62C, ILE82C, ILE85C, ILE99C, LEU101A, LEU113A, LEU113C, LEU125A, LEU14C, LEU159C, LEU15A, LEU182A, LEU185A, LEU209C, LEU220C, LEU228C, LEU230C, LEU253A, LEU25C, LEU34A, LEU43C, LEU52C, LEU67A, LEU71A, LEU94C, LEU98C, LYS110A, LYS216C, LYS238A, LYS240A, LYS243A, LYS32C, LYS41C, LYS81C, MET104A, MET118C, MET165C, MET222C, MET65A, MET67C, PHE106C, PHE111A, PHE114A, PHE115C, PHE117C, PHE119A, PHE119C, PHE13C, PHE180A, PHE184A, PHE19C, PHE211C, PHE218C, PHE263A, PHE70A, PHE83C, PRO141C, PRO147A, PRO168C, PRO178A, PRO183A, PRO18A, PRO22C, PRO247A, PRO249A, PRO250A, PRO26C, PRO278A, PRO30C, PRO32A, PRO37C, PRO47A, PRO54C, PRO93C, SER103C, SER104C, SER10C, SER112C, SER116C, SER121A, SER161C, SER164C, SER168A, SER181A, SER186A, SER189A, SER213C, SER21C, SER232C, SER269A, SER35C, SER43A, SER44A, SER51C, SER59A, SER64C, SER66A, SER69A, SER69C, SER74A, SER80A, SER84C, SER91C, THR107C, THR110C, THR115A, THR117A, THR124A, THR142C, THR151C, THR15C, THR162C, THR165A, THR16C, THR189C, THR226C, THR256A, THR272A, THR276A, THR281A, THR282A, THR31C, THR39A, THR42A, THR53A, THR58A, THR58C, THR60C, THR61A, THR96C, THR97C, TRP109C, TRP155C, TRP169C, TRP191C, TRP245A, TRP27C, TRP97A, TYR105C, TYR116A, TYR133C, TYR145A, TYR175C, TYR177A, TYR187C, TYR191A, TYR192C, TYR236A, TYR255A, TYR28C, TYR61C, TYR68C, VAL126A, VAL153C, VAL157C, VAL166C, VAL167C, VAL169A, VAL16A, VAL17A, VAL187A, VAL212C, VAL242A, VAL275A, VAL40C, VAL44C, VAL45A, VAL49C, VAL50A, VAL53C, VAL56A, VAL70C, VAL71C, VAL96A
• A-D: ALA239A, ALA35D, ALA36D, ALA40D, ARG62A, ARG6D, ASN38D, ASP120A, ASP34D, ASP63A, GLN7D, GLU122A, GLU64A, GLU68A, GLY39D, GLY72A, HIS241A, LEU15A, LEU182A, LEU43D, LEU67A, LYS238A, LYS240A, LYS42D, MET65A, PHE119A, PHE180A, PHE184A, PHE32D, PHE70A, PRO183A, SER121A, SER181A, SER37D, SER41D, SER66A, SER69A, THR61A, VAL242A
• A-E: ALA87A, ARG156A, ARG23E, ASN28E, ASN88A, ASN90A, ASN93A, ASP25E, ASP29E, ASP35E, CYS24E, GLU223A, GLU27E, GLU36E, GLU7E, GLU92A, GLY26E, HIS225A, HIS227A, ILE18E, ILE226A, ILE8E, LEU86A, LYS224A, LYS91A, PRO19E, SER21E, THR85A, TRP22E, TYR89A, VAL20E
• B-C: ALA123C, ALA204B, ALA206C, ALA209B, ALA236C, ALA29B, ALA34B, ALA47B, ALA95C, ARG103B, ARG195B, ARG207C, ASN124C, ASN139B, ASN175B, ASN183B, ASN193B, ASN197B, ASN208B, ASN63C, ASN66C, ASP27B, ASP46B, ASP50C, CYS120C, CYS210C, CYS229B, CYS47C, GLN119B, GLN160C, GLN190B, GLN201C, GLN237C, GLN48C, GLU101C, GLU129B, GLU171B, GLU232B, GLU33C, GLU39C, GLU45C, GLU65C, GLY100C, GLY120B, GLY121C, GLY138B, GLY158C, GLY182B, GLY36B, GLY38C, HIS118B, HIS189B, HIS229C, HIS40B, ILE102C, ILE123B, ILE184B, ILE186B, ILE192B, ILE198C, ILE226B, ILE228B, ILE34C, ILE36C, ILE46C, ILE62C, ILE99C, LEU122B, LEU159C, LEU174B, LEU180B, LEU181B, LEU194B, LEU196C, LEU208C, LEU209C, LEU228C, LEU231B, LEU42B, LEU52C, LEU72C, LEU94C, LEU98C, LYS116B, LYS32C, LYS45B, LYS76B, MET118C, MET212B, MET67C, PHE117B, PHE119C, PHE187B, PHE191B, PHE211C, PRO128B, PRO188B, PRO199C, PRO200C, PRO203C, PRO204C, PRO205B, PRO211B, PRO227B, PRO230B, PRO37C, PRO39B, PRO54C, SER115B, SER161C, SER196B, SER234B, SER235B, SER35C, SER43B, SER44B, SER48B, SER51C, SER64C, SER69C, SER75B, THR121B, THR122C, THR125C, THR126C, THR162C, THR179B, THR185B, THR202C, THR205C, THR233B, THR31C, THR96C, THR97C, TRP155C, TRP173B, TRP221B, TRP38B, TYR172B, TYR206B, TYR35B, TYR61C, TYR68C, VAL127C, VAL157C, VAL207B, VAL210B, VAL212C, VAL33B, VAL37B, VAL40C, VAL49C, VAL53C, VAL70C, VAL71C
• C-D: ALA24C, ALA35D, ALA36D, ALA40D, ASN28D, ASN30D, ASN38D, ASN42C, ASP17C, ASP18C, ASP34D, CYS23C, GLN20C, GLY39D, HIS29C, ILE29D, LEU25C, LEU43D, LYS33D, LYS41C, LYS42D, PHE19C, PHE32D, PRO22C, PRO26C, PRO30C, SER21C, SER37D, SER41D, TRP27C, TYR26D, TYR28C, TYR31D