3DLU

structures of srp54 and srp19, the two proteins assembling the ribonucleic core of the signal recognition particle from the archaeon pyrococcus furiosus.

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-D
  • Int. Res.: 49
  • Norm. En. per Res.: -5.2047
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-9.7344	8.4663	-187.099	-188.3671	76	3	1	7623	4	25	33
A-C	0.0	69.5169	-24.5035	45.0134	23	1	1	1026	0	10	13
A-D	-98.6262	-9.3703	-147.035	-255.0315	49	11	1	5518	4	31	32
B-C	-106.9589	-5.3285	-148.54	-260.8275	51	14	1	5679	4	27	30
B-D	0.0	69.7451	-26.6283	43.1168	21	1	1	1020	0	10	12
C-D	-18.8611	4.862	-179.905	-193.9041	76	7	1	7668	6	24	36

Interface residues

• A-B: ARG17A, ARG17B, ARG21A, ARG21B, ARG3A, ARG3A9, ARG3B, ARG50A, ARG50B, ARG68A, ASP54A, ASP54B, CB6.821142.26021, GLU10A, GLU10B, GLU52A, GLU52B, GLU53A, GLU53B, GLU76A, GLU76B, GLY20A, GLY20B, GLY2A, GLY2B, GLY71A, GLY71B, ILE22A, ILE22B, ILE49A, ILE49B, ILE73A, ILE73B, LEU15A, LEU15B, LEU56A, LEU56B, LEU75A, LEU75B, LEU85A, LYS18A, LYS18B, LYS47A, LYS47B, LYS55A, LYS55B, LYS81A, LYS81B, MET72A, MET72B, PHE4A, PHE4B, PHE70A, PHE70B, PRO8A, PRO8B, SER16A, SER16B, SER77A, SER77B, SER9A, SER9B, THR69A, THR69B, TRP7A, TRP7B, TYR19A, TYR19B, VAL34A, VAL34B, VAL5A, VAL5B, VAL6A, VAL6B, VAL74A, VAL74B
• A-C: ARG50A, ARG50C, ARG68A, ARG68C, ASN57A, ASN57C, ASP54A, ASP54C, GLU52A, GLU52C, GLU53A, GLU53C, GLY71A, GLY71C, LEU56A, LEU56C, LYS55A, LYS55C, PHE70A, PHE70C, PRO58A, THR69A, THR69C
• A-D: ARG3D, ARG50A, ARG50D, ARG68A, ARG68D, ASN57A, ASP54A, ASP54D, GLU35A, GLU35D, GLU42A, GLU42D, GLU52A, GLU52D, GLU53A, GLU53D, GLU66A, GLU76D, GLY71A, GLY71D, ILE49A, ILE49D, ILE73A, ILE73D, LEU56A, LEU56D, LEU67A, LEU67D, LYS47A, LYS47D, LYS55A, LYS55D, MET72A, MET72D, PHE70A, PHE70D, PRO58A, THR69A, THR69D, VAL34A, VAL34D, VAL38A, VAL38D, VAL48A, VAL48D, VAL51A, VAL51D, VAL74A, VAL74D
• B-C: ARG3B, ARG3C, ARG50B, ARG50C, ARG68B, ARG68C, ASN57B, ASN57C, ASP54B, ASP54C, GLU35B, GLU35C, GLU42B, GLU42C, GLU52B, GLU52C, GLU53B, GLU53C, GLU76C, GLY71B, GLY71C, ILE49B, ILE49C, ILE73B, ILE73C, LEU56B, LEU56C, LEU67C, LEU75B, LEU75C, LYS47B, LYS47C, LYS55B, LYS55C, MET72B, MET72C, PHE70B, PHE70C, PRO58B, THR69B, THR69C, VAL34B, VAL34C, VAL38B, VAL38C, VAL48B, VAL48C, VAL51B, VAL51C, VAL74B, VAL74C
• B-D: ARG50B, ARG50D, ARG68B, ARG68D, ASN57B, ASP54B, ASP54D, GLU52B, GLU52D, GLU53B, GLU53D, GLY71B, GLY71D, LEU56B, LEU56D, LYS55B, LYS55D, PHE70B, PHE70D, THR69B, THR69D
• C-D: ARG17C, ARG17D, ARG21C, ARG21D, ARG3C, ARG3D, ARG50C, ARG50D, ASP54C, ASP54D, GLU10C, GLU10D, GLU52C, GLU52D, GLU53C, GLU53D, GLU76C, GLU76D, GLY20C, GLY20D, GLY2C, GLY2D, GLY71C, GLY71D, GLY80C, GLY80D, ILE22C, ILE22D, ILE49C, ILE49D, ILE73C, ILE73D, LEU15C, LEU15D, LEU56C, LEU56D, LEU75C, LEU75D, LYS18C, LYS18D, LYS47C, LYS47D, LYS55C, LYS55D, LYS81C, LYS81D, MET72C, MET72D, PHE4C, PHE4D, PHE70C, PHE70D, PRO78C, PRO78D, PRO8C, PRO8D, SER16C, SER16D, SER77C, SER77D, SER9C, SER9D, THR69C, THR69D, TRP7C, TRP7D, TYR19C, TYR19D, VAL34C, VAL34D, VAL5C, VAL5D, VAL6C, VAL6D, VAL74C, VAL74D