3DIN

crystal structure of the protein-translocation complex formed by the secy channel and the seca atpase

• Total interactions analyzed: 28
• Total true interactions: 11
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 273
  • Norm. En. per Res.: -2.6547
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-C	-11.8281	-63.3712	-649.523	-724.7223	273	81	23	32689	1	136	132
A-E	-17.8032	-12.4002	-101.134	-131.3375	53	12	1	4680	2	20	16
A-B	-17.7775	-31.8843	-83.3611	-133.0229	94	7	0	4901	2	48	58
C-D	0.0	-16.8304	-287.73	-304.5605	133	22	19	14146	0	7	10
C-E	-10.2163	23.9337	-270.847	-257.1296	142	24	10	13293	0	23	19
D-E	0.0	0.0	-4.3772	-4.3772	9	0	0	393	0	0	0
B-F	-7.0288	-70.2835	-625.772	-703.0843	273	79	22	32239	0	136	130
B-H	-8.4281	-11.6625	-98.9306	-119.0212	52	6	0	4438	2	20	15
F-G	0.0	-16.8027	-297.178	-313.9807	134	38	22	15035	0	7	10
F-H	-13.8068	23.5525	-277.833	-268.0873	146	29	13	13885	0	24	19
G-H	0.0	0.0	-4.3676	-4.3676	9	0	0	404	0	0	0

Interface residues

• A-C: ALA236C, ALA245C, ALA257C, ALA262A, ALA301A, ALA341A, ALA381A, ALA398A, ALA654A, ALA775A, ALA810A, ARG107C, ARG113C, ARG238C, ARG239C, ARG246C, ARG247C, ARG251C, ARG252C, ARG263A, ARG281A, ARG302A, ARG336C, ARG346C, ARG349C, ARG372A, ARG373A, ARG416C, ARG557A, ARG592A, ARG638A, ARG653A, ARG659A, ARG763A, ARG764A, ARG779A, ARG803A, ARG804A, ASN266C, ASN322A, ASN328A, ASN334C, ASN337A, ASN530A, ASN625A, ASN634A, ASN806A, ASP260A, ASP325A, ASP327C, ASP348A, ASP350A, ASP362A, ASP404C, ASP588A, ASP589A, ASP678A, ASP785A, ASP799A, ASP807A, GLN234C, GLN235C, GLN243C, GLN267C, GLN380A, GLN407C, GLN408C, GLN428A, GLN598A, GLN651A, GLN661A, GLN777A, GLN783A, GLU104C, GLU108C, GLU110C, GLU111C, GLU237C, GLU261A, GLU274A, GLU299A, GLU321A, GLU330C, GLU333C, GLU363A, GLU393A, GLU410C, GLU419C, GLU425A, GLU485A, GLU556A, GLU559A, GLU631A, GLU767A, GLU768A, GLU770A, GLU774A, GLU789A, GLU793A, GLU800A, GLY109C, GLY112C, GLY182C, GLY250C, GLY255C, GLY256C, GLY269C, GLY327A, GLY339C, GLY344C, GLY348C, GLY366A, GLY376A, GLY377A, GLY420C, GLY632A, GLY782A, HIS334A, HIS379A, HIS412C, HIS417C, HIS558A, HIS771A, ILE183C, ILE230C, ILE231C, ILE240C, ILE242C, ILE259A, ILE263C, ILE267A, ILE304A, ILE305A, ILE331C, ILE335C, ILE336A, ILE395A, ILE400A, ILE405C, ILE406C, ILE422C, ILE484A, ILE563A, ILE593A, ILE633A, ILE637A, ILE662A, ILE675A, ILE750A, ILE757A, ILE758A, ILE787A, ILE805A, ILE809A, LEU232C, LEU261C, LEU306A, LEU323A, LEU331A, LEU332A, LEU339A, LEU344A, LEU345C, LEU378A, LEU590A, LEU591A, LEU641A, LEU658A, LEU672A, LEU766A, LEU778A, LYS114C, LYS115C, LYS264C, LYS300A, LYS337C, LYS340A, LYS346A, LYS423C, LYS457A, LYS486A, LYS628A, LYS629A, LYS639A, LYS650A, LYS673A, LYS773A, LYS784A, LYS791A, LYS792A, MET105C, MET409C, MET413C, MET415C, MET642A, MET644A, MET754A, MET797A, MET801A, MET802A, PHE282A, PHE326C, PHE345A, PHE364A, PHE421C, PHE594A, PHE635A, PHE676A, PHE798A, PRO262C, PRO265A, PRO326A, PRO328C, PRO343C, PRO347C, PRO786A, SER258C, SER322C, SER330A, SER332C, SER375A, SER394A, SER424A, SER483A, SER560A, SER636A, SER780A, THR241C, THR249C, THR259C, THR303A, THR307A, THR365A, THR396A, THR411C, THR482A, THR640A, THR682A, THR794A, TRP732A, TYR244C, TYR254C, TYR260C, TYR324A, TYR333A, TYR338C, TYR374A, TYR418C, TYR668A, TYR671A, TYR765A, TYR781A, TYR795A, TYR796A, VAL248C, VAL253C, VAL265C, VAL278A, VAL297A, VAL311A, VAL323C, VAL324C, VAL329A, VAL349A, VAL361A, VAL414C, VAL630A, VAL679A, VAL680A, VAL769A, VAL772A, VAL776A, VAL788A
• A-E: ALA33E, ARG407A, ARG45E, ARG46E, ARG779A, ASN404A, ASP50E, ASP646A, ASP785A, GLN403A, GLN428A, GLU423A, GLU425A, GLU643A, GLY35E, GLY431A, GLY44E, GLY48E, GLY52E, GLY53E, HIS40E, ILE2A, ILE55E, ILE787A, LEU39E, LYS420A, LYS47E, LYS54E, LYS639A, LYS6A, LYS784A, LYS791A, MET1A, MET642A, MET644A, PHE34E, PHE402A, PHE426A, PHE43E, PHE635A, PHE790A, PRO786A, SER36E, SER424A, THR41E, THR51E, THR56E, TYR430A, VAL427A, VAL429A, VAL42E, VAL647A, VAL788A
• A-B: ALA167A, ALA167B, ARG231A, ARG231B, ARG737A, ARG737B, ARG747A, ARG747B, ARG751A, ARG751B, ARG756A, ARG756B, ARG763A, ARG763B, ARG815A, ARG815B, ASN163A, ASN163B, ASN239A, ASN239B, ASN48A, ASN48B, ASP237A, ASP237B, ASP240A, ASP240B, ASP745A, ASP745B, ASP759A, ASP759B, GLN740A, GLN740B, GLU45A, GLU45B, GLU741A, GLU741B, GLU744A, GLU744B, GLY270A, GLY270B, GLY743A, GLY743B, ILE268A, ILE268B, ILE742A, ILE742B, ILE750A, ILE750B, LEU234A, LEU234B, LEU236A, LEU236B, LEU753A, LEU753B, LEU755A, LEU755B, LEU814A, LEU814B, LYS210A, LYS210B, LYS241A, LYS241B, LYS273A, LYS273B, LYS391A, LYS391B, LYS738A, LYS738B, LYS739A, LYS739B, LYS748A, LYS748B, PHE752A, PHE752B, PRO271A, PRO271B, PRO276A, PRO276B, SER269A, SER269B, SER272A, SER272B, SER275A, SER275B, TYR746A, TYR746B, TYR812A, TYR812B, VAL235A, VAL235B, VAL749A, VAL749B, VAL816A, VAL816B
• C-D: ALA15D, ALA193C, ALA197C, ALA221C, ALA223C, ALA24C, ALA38D, ALA395C, ALA398C, ALA402C, ALA57D, ARG17C, ARG198C, ARG23D, ARG29C, ARG357C, ARG361C, ASN266C, ASN360C, ASP404C, ASP48D, GLN234C, GLN235C, GLN267C, GLU14D, GLU25D, GLU410C, GLY186C, GLY194C, GLY229C, GLY31C, GLY31D, GLY340C, GLY366C, GLY400C, GLY53D, GLY63D, ILE12D, ILE189C, ILE18C, ILE18D, ILE191C, ILE195C, ILE220C, ILE225C, ILE227C, ILE230C, ILE231C, ILE263C, ILE26C, ILE32C, ILE342C, ILE365C, ILE36D, ILE397C, ILE405C, ILE406C, ILE50D, ILE58D, LEU14C, LEU190C, LEU224C, LEU232C, LEU25C, LEU26D, LEU27D, LEU34D, LEU37D, LEU403C, LEU41C, LEU47D, LEU62D, LYS10C, LYS16D, LYS17D, LYS24D, MET30C, MET409C, MET413C, PHE192C, PHE20C, PHE228C, PHE22C, PHE28C, PHE30D, PHE316C, PHE364C, PHE369C, PHE44D, PHE45D, PHE49D, PHE51D, PHE59D, PHE9C, PRO200C, PRO21D, PRO35C, SER19D, SER201C, SER22D, SER29D, SER41D, SER52D, SER56D, THR21C, THR226C, THR28D, THR363C, THR40D, TRP20D, TRP216C, TYR199C, TYR33C, TYR341C, TYR43D, VAL11D, VAL196C, VAL222C, VAL233C, VAL265C, VAL27C, VAL32D, VAL33D, VAL358C, VAL35D, VAL362C, VAL368C, VAL399C, VAL39D, VAL401C, VAL46D, VAL54D, VAL55D
• C-E: ALA117C, ALA148C, ALA15E, ALA166C, ALA33E, ALA71E, ARG107C, ARG113C, ARG121C, ARG122C, ARG15C, ARG177C, ARG45E, ASN185C, ASP16C, ASP50E, CYS67E, GLN21E, GLN23E, GLN93C, GLU108C, GLU110C, GLU111C, GLU176C, GLU180C, GLU29E, GLY109C, GLY112C, GLY128C, GLY129C, GLY167C, GLY175C, GLY184C, GLY31C, GLY31E, GLY32E, GLY35E, GLY37E, GLY38E, GLY44E, GLY48E, GLY53E, HIS40E, HIS412C, HIS9E, ILE11E, ILE127C, ILE12E, ILE17E, ILE183C, ILE26C, ILE271C, ILE34C, ILE55E, LEU123C, LEU125C, LEU126C, LEU154C, LEU159C, LEU165C, LEU16E, LEU171C, LEU172C, LEU174C, LEU23C, LEU30E, LEU39E, LEU57E, LEU59E, LEU62E, LEU92C, LYS114C, LYS115C, LYS118C, LYS181C, LYS26E, LYS47E, LYS54E, MET162C, MET164C, MET169C, MET19E, MET24E, MET30C, PHE116C, PHE133C, PHE156C, PHE170C, PHE27E, PHE34E, PHE43E, PHE63E, PHE64E, PHE72E, PHE78C, PRO149C, PRO35C, PRO37C, SER13E, SER160C, SER163C, SER25E, SER28E, SER36E, SER60E, SER66E, SER81C, SER89C, THR10E, THR120C, THR124C, THR157C, THR161C, THR168C, THR179C, THR411C, THR41E, THR51E, THR56E, THR70E, THR79C, TRP173C, TYR119C, TYR18E, TYR33C, TYR85C, VAL147C, VAL14E, VAL153C, VAL158C, VAL20E, VAL22E, VAL270C, VAL27C, VAL36C, VAL42E, VAL58E, VAL61E, VAL65E, VAL68E, VAL69E, VAL73E
• D-E: ALA61D, GLY63D, GLY65D, LEU62D, PHE72E, VAL65E, VAL68E, VAL69E, VAL73E
• B-F: ALA236F, ALA245F, ALA257F, ALA262B, ALA301B, ALA341B, ALA381B, ALA398B, ALA654B, ALA775B, ALA810B, ARG107F, ARG113F, ARG238F, ARG239F, ARG246F, ARG247F, ARG251F, ARG252F, ARG263B, ARG281B, ARG302B, ARG329F, ARG336F, ARG346F, ARG349F, ARG372B, ARG373B, ARG416F, ARG557B, ARG592B, ARG638B, ARG653B, ARG659B, ARG763B, ARG764B, ARG779B, ARG803B, ARG804B, ASN266F, ASN322B, ASN328B, ASN334F, ASN337B, ASN530B, ASN625B, ASN634B, ASN806B, ASP260B, ASP325B, ASP327F, ASP348B, ASP350B, ASP404F, ASP588B, ASP589B, ASP678B, ASP785B, ASP799B, ASP807B, GLN234F, GLN235F, GLN243F, GLN267F, GLN380B, GLN407F, GLN408F, GLN428B, GLN598B, GLN651B, GLN661B, GLN777B, GLN783B, GLU104F, GLU108F, GLU110F, GLU111F, GLU237F, GLU261B, GLU274B, GLU299B, GLU321B, GLU330F, GLU333F, GLU363B, GLU393B, GLU410F, GLU419F, GLU485B, GLU556B, GLU559B, GLU631B, GLU767B, GLU768B, GLU770B, GLU774B, GLU789B, GLU793B, GLU800B, GLY109F, GLY112F, GLY182F, GLY250F, GLY255F, GLY256F, GLY269F, GLY327B, GLY339F, GLY344F, GLY348F, GLY366B, GLY376B, GLY377B, GLY420F, GLY632B, GLY782B, HIS334B, HIS379B, HIS412F, HIS417F, HIS558B, HIS771B, ILE183F, ILE230F, ILE231F, ILE240F, ILE242F, ILE259B, ILE263F, ILE267B, ILE304B, ILE305B, ILE331F, ILE335F, ILE336B, ILE395B, ILE400B, ILE405F, ILE406F, ILE422F, ILE484B, ILE563B, ILE593B, ILE633B, ILE637B, ILE662B, ILE675B, ILE750B, ILE757B, ILE758B, ILE787B, ILE805B, ILE809B, LEU232F, LEU261F, LEU306B, LEU323B, LEU331B, LEU332B, LEU339B, LEU344B, LEU345F, LEU378B, LEU590B, LEU591B, LEU641B, LEU658B, LEU672B, LEU766B, LEU778B, LYS114F, LYS115F, LYS264F, LYS300B, LYS337F, LYS340B, LYS346B, LYS423F, LYS457B, LYS486B, LYS628B, LYS629B, LYS639B, LYS650B, LYS673B, LYS773B, LYS784B, LYS791B, LYS792B, MET105F, MET409F, MET413F, MET415F, MET642B, MET644B, MET754B, MET797B, MET801B, MET802B, PHE282B, PHE326F, PHE345B, PHE364B, PHE421F, PHE594B, PHE635B, PHE676B, PHE798B, PRO262F, PRO265B, PRO326B, PRO328F, PRO343F, PRO347F, PRO786B, SER258F, SER322F, SER330B, SER332F, SER375B, SER394B, SER424B, SER483B, SER560B, SER636B, SER780B, THR241F, THR249F, THR259F, THR264B, THR303B, THR307B, THR365B, THR396B, THR411F, THR482B, THR640B, THR682B, THR794B, TRP732B, TYR244F, TYR254F, TYR260F, TYR324B, TYR333B, TYR338F, TYR374B, TYR418F, TYR668B, TYR671B, TYR765B, TYR781B, TYR795B, TYR796B, VAL248F, VAL253F, VAL265F, VAL278B, VAL297B, VAL311B, VAL323F, VAL324F, VAL329B, VAL349B, VAL361B, VAL414F, VAL630B, VAL679B, VAL680B, VAL769B, VAL772B, VAL776B, VAL788B
• B-H: ALA33H, ARG407B, ARG45H, ARG46H, ARG779B, ASP50H, ASP646B, ASP785B, GLN403B, GLN428B, GLN783B, GLU423B, GLU425B, GLU643B, GLY35H, GLY431B, GLY44H, GLY48H, GLY52H, GLY53H, HIS40H, ILE2B, ILE55H, ILE787B, LEU39H, LYS420B, LYS47H, LYS54H, LYS639B, LYS6B, LYS784B, LYS791B, MET1B, MET642B, MET644B, PHE34H, PHE426B, PHE43H, PHE635B, PHE790B, PRO786B, SER36H, SER424B, THR41H, THR51H, THR56H, TYR430B, VAL427B, VAL429B, VAL42H, VAL647B, VAL788B
• F-G: ALA15G, ALA193F, ALA197F, ALA221F, ALA223F, ALA24F, ALA38G, ALA395F, ALA398F, ALA402F, ALA57G, ARG17F, ARG198F, ARG23G, ARG29F, ARG357F, ARG361F, ASN266F, ASN360F, ASP404F, ASP48G, GLN234F, GLN235F, GLN267F, GLU14G, GLU25G, GLU410F, GLY186F, GLY194F, GLY229F, GLY31F, GLY31G, GLY340F, GLY366F, GLY400F, GLY53G, GLY63G, ILE12G, ILE189F, ILE18F, ILE18G, ILE191F, ILE195F, ILE220F, ILE225F, ILE227F, ILE230F, ILE231F, ILE263F, ILE26F, ILE32F, ILE342F, ILE365F, ILE36G, ILE397F, ILE405F, ILE406F, ILE50G, ILE58G, LEU14F, LEU190F, LEU224F, LEU232F, LEU25F, LEU26G, LEU27G, LEU34G, LEU37G, LEU403F, LEU41F, LEU47G, LEU62G, LYS10F, LYS16G, LYS17G, LYS24G, MET30F, MET409F, MET413F, PHE192F, PHE20F, PHE228F, PHE22F, PHE28F, PHE30G, PHE316F, PHE364F, PHE369F, PHE44G, PHE45G, PHE49G, PHE51G, PHE59G, PHE9F, PRO200F, PRO21G, PRO35F, SER19G, SER201F, SER22G, SER29G, SER41G, SER52G, SER56G, THR21F, THR226F, THR28G, THR363F, THR40G, TRP20G, TRP216F, TYR199F, TYR33F, TYR341F, TYR43G, VAL11G, VAL196F, VAL222F, VAL233F, VAL265F, VAL27F, VAL32G, VAL33G, VAL358F, VAL35G, VAL362F, VAL368F, VAL399F, VAL39G, VAL401F, VAL42G, VAL46G, VAL54G, VAL55G
• F-H: ALA117F, ALA148F, ALA15H, ALA166F, ALA33H, ALA71H, ALA88F, ARG107F, ARG113F, ARG121F, ARG122F, ARG15F, ARG177F, ARG29F, ARG45H, ASN185F, ASP16F, ASP50H, CYS67H, GLN155F, GLN21H, GLN23H, GLN93F, GLU108F, GLU110F, GLU111F, GLU176F, GLU180F, GLU29H, GLY109F, GLY112F, GLY128F, GLY129F, GLY167F, GLY175F, GLY184F, GLY31F, GLY31H, GLY32H, GLY35H, GLY37H, GLY38F, GLY38H, GLY44H, GLY48H, GLY53H, HIS40H, HIS412F, HIS9H, ILE11H, ILE127F, ILE12H, ILE17H, ILE183F, ILE26F, ILE271F, ILE34F, ILE55H, LEU123F, LEU125F, LEU126F, LEU154F, LEU159F, LEU165F, LEU16H, LEU171F, LEU172F, LEU174F, LEU23F, LEU30H, LEU39H, LEU49H, LEU57H, LEU59H, LEU62H, LEU92F, LYS114F, LYS115F, LYS118F, LYS181F, LYS26H, LYS47H, LYS54H, MET162F, MET164F, MET169F, MET19H, MET24H, MET30F, PHE116F, PHE133F, PHE156F, PHE170F, PHE27H, PHE34H, PHE43H, PHE63H, PHE64H, PHE72H, PHE78F, PRO149F, PRO35F, PRO37F, SER13H, SER160F, SER163F, SER25H, SER28H, SER36H, SER60H, SER66H, SER89F, THR10H, THR120F, THR124F, THR157F, THR161F, THR168F, THR179F, THR411F, THR41H, THR51H, THR56H, THR70H, THR79F, TRP173F, TYR119F, TYR18H, TYR33F, TYR85F, VAL147F, VAL14H, VAL153F, VAL158F, VAL20H, VAL22H, VAL270F, VAL27F, VAL36F, VAL42H, VAL58H, VAL61H, VAL65H, VAL68H, VAL69H, VAL73H
• G-H: ALA61G, GLY63G, GLY65G, LEU62G, PHE72H, VAL65H, VAL68H, VAL69H, VAL73H