3DH3

crystal structure of rluf in complex with a 22 nucleotide rna substrate

• Total interactions analyzed: 28
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-D
  • Int. Res.: 33
  • Norm. En. per Res.: -2.8444
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-7.4197	-6.1249	-7.2061	-20.7507	18	1	0	495	0	14	16
A-D	-38.044	-39.9895	-15.8304	-93.8638	33	5	1	2359	3	7	8
B-C	-9.3319	-31.4338	-53.0318	-93.7976	41	9	1	2973	3	12	12
B-D	0.0	0.0	-0.1799	-0.1799	2	0	0	33	0	0	1
C-D	0.0	-10.4122	-1.6517	-12.0639	12	0	0	276	0	12	16

Interface residues

• A-B: ARG26A, ARG26B, ARG87A, ARG87B, ASN32A, ASN89B, ASP84A, ASP84B, ASP92A, ASP92B, GLN30A, GLN30B, GLU29A, GLU29B, GLU83B, GLU86A, GLY85A, GLY85B
• A-D: ARG39D, ARG87A, ASN36D, ASN73A, ASN89A, ASP50D, ASP88A, GLU220A, GLY215A, GLY219A, GLY37D, GLY49D, GLY56D, GLY77A, ILE216A, ILE78A, LEU218A, LEU35D, LEU58D, LEU72A, LYS202A, LYS38D, LYS53D, PHE34D, PHE93A, PRO217A, PRO75A, TRP221A, VAL51D, VAL52D, VAL76A, VAL79A, VAL94A
• B-C: ARG39B, ARG87C, ASN36B, ASN73C, ASN89C, ASP50B, ASP88C, ASP92C, GLN111C, GLU220C, GLU60B, GLY215C, GLY219C, GLY37B, GLY49B, GLY56B, GLY77C, ILE216C, ILE78C, ILE90C, LEU218C, LEU35B, LEU58B, LEU72C, LYS202C, LYS38B, LYS47B, LYS53B, LYS74C, PHE34B, PHE93C, PRO217C, PRO48B, PRO75C, TRP221C, VAL46B, VAL51B, VAL52B, VAL76C, VAL79C, VAL94C
• B-D: ARG39B, ARG39D
• C-D: ARG26C, ARG26D, ARG87C, ARG87D, ASP84C, ASP84D, GLN30C, GLN30D, GLU29C, GLU29D, GLY85C, GLY85D