3DF3
crystal structure of the bacterial ribosome from escherichia coli in complex with hygromycin b. this file contains the 30s subunit of the second 70s ribosome, with hygromycin b bound. the entire crystal structure contains two 70s ribosomes.
Total interactions analyzed 210
Total true interactions 23
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -4.6015
Hub Node C(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-E 0.0 0.0 -2.0692 -2.0692 12 0 0 234 0 5 6
C-J 0.0 0.0 -63.6601 -63.6601 57 2 2 2958 0 11 7
C-N -10.6356 -51.5485 -253.814 -315.9981 77 11 5 9506 2 34 33
D-E 0.0 -32.7672 -41.7423 -74.5095 47 4 0 2278 2 13 12
D-P 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
E-H -23.3971 -30.7387 -138.461 -192.5967 56 20 2 5876 4 16 13
E-B 0.0 0.0 -0.3796 -0.3796 3 0 0 42 0 1 3
F-R -41.555 11.7773 -161.458 -191.2356 59 28 4 6418 0 14 21
G-I 0.0 0.0 -1.913 -1.913 15 0 0 351 0 7 6
G-K 0.0 0.0 -27.0258 -27.0258 29 1 2 1464 0 4 2
H-L 0.0 0.0 -4.9175 -4.9175 9 0 1 378 0 0 0
H-Q 0.0 0.0 -17.9671 -17.9671 17 0 0 1045 0 3 7
H-B 0.0 0.0 -0.0504 -0.0504 6 0 0 32 0 1 2
I-J 0.0 -7.8514 -14.8561 -22.7076 19 1 0 1016 0 9 11
I-N 0.0 0.0 -14.6349 -14.6349 7 1 0 566 0 0 1
J-N -21.071 -24.8622 -202.546 -248.4792 54 19 5 8013 1 16 28
K-R -5.389 -1.2023 -20.175 -26.7663 20 0 0 1041 0 6 11
K-U -74.4391 27.212 -231.054 -278.2812 81 37 4 11341 0 37 41
L-Q 0.0 0.0 -40.363 -40.363 21 4 3 1861 0 0 7
M-S 0.0 -6.3764 -66.3506 -72.727 44 11 0 3131 0 11 17
N-S 0.0 4.6527 -61.1457 -56.493 31 12 1 2838 0 5 10
O-Q 0.0 0.0 -6.4056 -6.4056 8 0 1 431 0 0 0
R-U 0.0 -10.7466 -34.5162 -45.2628 21 1 0 1876 2 18 12