3DF1
crystal structure of the bacterial ribosome from escherichia coli in complex with hygromycin b. this file contains the 30s subunit of the first 70s ribosome, with hygromycin b bound. the entire crystal structure contains two 70s ribosomes.
Total interactions analyzed 210
Total true interactions 24
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -4.5796
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-D 0.0 0.0 -0.0073 -0.0073 2 0 0 6 0 0 2
C-E 0.0 -26.9112 -5.7233 -32.6345 15 0 0 357 2 6 6
C-J 0.0 0.0 -62.9576 -62.9576 57 2 2 2957 0 11 7
C-N -11.7106 -52.3201 -253.988 -318.0187 76 12 5 9511 2 34 33
D-E 0.0 -32.4836 -41.1235 -73.6071 47 4 0 2293 2 13 12
D-P 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
E-H -24.0684 -30.7243 -133.477 -188.2696 57 18 1 5900 4 16 13
E-B 0.0 0.0 -0.3821 -0.3821 3 0 0 42 0 1 3
F-R -26.8389 11.9942 -165.757 -180.6016 59 24 4 6447 0 14 21
G-I 0.0 0.0 -1.9043 -1.9043 16 0 0 346 0 7 5
G-K -2.469 0.0 -34.7871 -37.2561 23 12 2 1923 0 2 3
H-L 0.0 0.0 -4.8601 -4.8601 9 0 1 381 0 0 0
H-Q 0.0 0.0 -17.6359 -17.6359 17 1 0 1037 0 3 7
H-B 0.0 0.0 -0.0566 -0.0566 6 0 0 34 0 1 2
I-J 0.0 -7.913 -14.8346 -22.7476 19 1 0 1013 0 9 11
I-N 0.0 0.0 -14.6015 -14.6015 7 1 0 563 0 0 1
J-N -21.6873 -25.0277 -200.582 -247.297 54 20 5 8042 1 16 28
K-R -5.2211 -1.357 -19.7519 -26.33 20 0 0 1031 0 6 11
K-U -78.3726 26.8226 -225.459 -277.009 81 42 4 11394 0 37 39
L-Q 0.0 0.0 -41.1328 -41.1328 20 3 3 1880 0 0 7
M-S 0.0 -6.3508 -66.0568 -72.4076 41 10 0 3049 0 11 17
N-S 0.0 4.6395 -61.2484 -56.609 31 12 1 2868 0 5 10
O-Q 0.0 0.0 -0.9924 -0.9924 5 0 0 164 0 0 0
R-U 0.0 -10.6474 -34.2738 -44.9212 21 1 0 1857 2 18 12