3D9P

snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: B-Z
  • Int. Res.: 39
  • Norm. En. per Res.: -3.8145
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-27.2013	-14.192	-125.361	-166.7542	46	8	1	4534	1	14	16
A-Y	-2.1277	0.0	-63.4347	-65.5624	32	2	2	2277	0	0	0
B-Y	0.0	0.0	-0.0541	-0.0541	2	0	0	12	0	0	0
B-Z	-27.6291	0.0	-121.137	-148.7662	39	4	2	3935	0	0	0

Interface residues

• A-B: ALA24A, ALA3B, ASN15A, ASN15B, ASN8B, ASP16A, ASP16B, GLN28A, GLU10A, GLU10B, GLU2B, GLU57A, ILE21A, ILE29A, LEU11B, LEU14A, LEU14B, LYS18A, LYS23A, LYS25A, LYS31A, LYS49B, LYS53B, LYS55A, LYS55B, LYS5B, MET1B, MET26A, PHE50B, PHE7B, PRO19A, PRO20A, SER13A, SER13B, SER22A, SER46B, SER9A, SER9B, THR27A, THR6B, TYR12B, TYR17A, TYR17B, TYR58A, TYR58B, VAL4B
• A-Y: ALA24A, ARG71A, ASP67A, GLN72A, ILE110A, ILE21A, ILE66A, ILE69A, LEU114A, LEU116A, LEU63A, LYS109A, LYS23A, LYS25A, MET26A, PRO20A, PRO3Y, PRO61A, SER108A, SER22A, SER68A, THR112A, THR27A, THR30A, TRP117A, TYR1Y, TYR64A, VAL111A, VAL113A, VAL60A, VAL65A, VAL70A
• B-Y: ASP16B, TYR1Y
• B-Z: ALA24B, ARG71B, ASN120B, ASP67B, GLN72B, HIS75B, ILE110B, ILE21B, ILE66B, ILE69B, LEU114B, LEU116B, LEU63B, LYS109B, LYS119B, LYS23B, LYS25B, MET26B, PRO-1Z, PRO19B, PRO20B, PRO3Z, PRO61B, PRO6Z, SER0Z, SER22B, SER68B, THR112B, THR27B, THR30B, THR4Z, TRP117B, TYR1Z, TYR64B, VAL113B, VAL122B, VAL60B, VAL65B, VAL70B