3D9O

snapshots of the rna processing factor scaf8 bound to different phosphorylated forms of the carboxy-terminal domain of rna-polymerase ii

• Total interactions analyzed: 3
• Total true interactions: 2
• Strongest Interaction:
  • Chains: B-Z
  • Int. Res.: 46
  • Norm. En. per Res.: -3.7128
• Hub Node: A(1)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-25.9347	-19.0494	-86.9604	-131.9445	36	4	0	2988	3	16	16
B-Z	-24.7601	0.0	-146.03	-170.7901	46	3	2	5012	0	0	0

Interface residues

• A-B: ALA24A, ALA3B, ASN8B, ASP16A, ASP16B, GLN28A, GLU10A, GLU10B, GLU2B, GLU57A, HIS42B, ILE21A, ILE29A, LEU14A, LEU14B, LYS18A, LYS23A, LYS25A, LYS49B, LYS55A, LYS55B, LYS5B, PHE7B, PRO19A, PRO20A, SER13A, SER13B, SER22A, SER46B, SER9B, THR27A, THR6B, TYR12B, TYR58A, TYR58B, VAL4B
• B-Z: ALA24B, ARG112B, ARG71B, ARG74B, ASN120B, ASP67B, GLN72B, GLN76B, HIS75B, ILE110B, ILE21B, ILE34B, ILE66B, ILE69B, LEU114B, LEU116B, LEU63B, LYS109B, LYS119B, LYS23B, LYS25B, LYS31B, PRO-1Z, PRO19B, PRO20B, PRO3Z, PRO61B, PRO6Z, SER0Z, SER22B, SER2Z, SER5Z, SER68B, SER73B, SER7Z, THR27B, THR30B, THR4Z, TRP117B, TYR1Z, TYR64B, VAL113B, VAL122B, VAL60B, VAL65B, VAL70B