3D4R

crystal structure of a duf2118 family protein (mmp0046) from methanococcus maripaludis at 2.20 a resolution

• Total interactions analyzed: 15
• Total true interactions: 9
• Strongest Interaction:
  • Chains: E-F
  • Int. Res.: 107
  • Norm. En. per Res.: -4.7155
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-135.2419	-51.2398	-314.965	-501.4467	111	14	6	12789	5	43	40
A-C	-3.0709	-6.6575	-15.169	-24.8974	43	0	0	1075	1	14	16
A-D	0.0	0.0	-5.3479	-5.3479	12	0	0	418	0	19	17
A-E	-10.2211	1.4126	-41.3567	-50.1652	26	1	1	1889	0	8	12
B-E	-30.9898	-14.5822	-201.151	-246.723	76	2	4	7621	3	19	19
B-F	0.0	0.0	-0.97	-0.97	8	0	0	142	0	2	6
C-D	-116.9225	-27.2032	-306.718	-450.8437	114	17	5	12380	0	42	38
C-E	-13.0846	-2.2927	-41.0301	-56.4074	46	1	2	2653	1	11	6
E-F	-143.6578	-44.1344	-316.767	-504.5592	107	16	8	12768	5	44	41

Interface residues

• A-B: ALA19A, ALA19B, ALA26A, ALA26B, ARG102A, ARG102B, ARG108A, ARG17A, ARG17B, ASN25A, ASN25B, ASP23A, ASP23B, ASP70A, ASP70B, ASP98A, ASP98B, GLN67A, GLN67B, GLU149A, GLU149B, GLU150A, GLU150B, GLU21A, GLU21B, GLU31A, GLU31B, GLU34A, GLU34B, GLU35B, GLY100A, GLY100B, GLY128A, GLY128B, GLY24A, GLY24B, HIS72A, HIS72B, ILE131A, ILE131B, ILE27A, ILE27B, ILE28A, ILE28B, ILE3B, ILE66A, ILE66B, ILE96A, ILE96B, LEU104A, LEU104B, LEU109A, LEU148A, LEU148B, LEU30A, LEU30B, LEU65A, LEU65B, LEU74A, LEU74B, LEU77A, LEU77B, LEU83A, LYS105A, LYS22A, LYS22B, LYS2B, LYS32B, LYS71A, LYS71B, LYS78A, LYS78B, LYS82A, LYS82B, PHE101A, PHE101B, PHE29A, PHE29B, PHE99A, PHE99B, PRO4B, PRO69A, PRO69B, PRO95A, PRO95B, SER127A, SER37B, THR129A, THR129B, THR73A, THR73B, THR75A, THR75B, THR81A, THR81B, TYR107A, TYR107B, TYR36A, TYR36B, TYR48B, TYR68A, TYR68B, TYR76A, TYR76B, VAL103A, VAL103B, VAL130A, VAL130B, VAL18A, VAL18B, VAL64B
• A-C: ALA79C, ALA88A, ARG120A, ARG17C, ASN142A, ASN25C, ASN39C, ASP23C, ASP58A, GLU139A, GLU21C, GLU89A, GLU9C, GLY10C, GLY24C, GLY38C, GLY40C, GLY80C, ILE136A, ILE20C, ILE84A, LEU112A, LEU12C, LEU42C, LEU57A, LEU60C, LYS105A, LYS22C, LYS41C, LYS61C, PRO125A, PRO87A, SER138A, SER37C, SER85A, THR59C, TYR121A, TYR143A, TYR36C, TYR44C, VAL122A, VAL144A, VAL86A
• A-D: ARG120A, ASP118A, ASP33D, GLU31D, GLU34D, GLU35D, GLY117A, LYS115A, LYS116A, LYS32D, SER114A, TYR91A
• A-E: ALA141E, ARG102A, ARG108A, ARG140E, ASN123A, ASN142E, GLU139E, GLU150A, GLY106A, GLY90E, LEU104A, LEU109A, LYS105A, LYS115E, LYS116E, LYS92E, SER124A, SER127A, SER138E, TYR107A, TYR121A, TYR91E, TYR94E, VAL103A, VAL122A, VAL93E
• B-E: ALA110B, ALA110E, ALA141E, ARG108B, ARG108E, ARG120B, ARG120E, ARG140E, ASN-5B, ASN134E, ASN142E, ASP118B, ASP118E, ASP70E, ASP98B, ASP98E, GLN-1B, GLN-1E, GLU-6B, GLU113B, GLU113E, GLU135B, GLU135E, GLY0B, GLY0E, GLY117B, GLY117E, ILE3B, ILE3E, ILE96B, ILE96E, LEU-4B, LEU109B, LEU112B, LEU112E, LEU119B, LEU119E, LYS115B, LYS115E, LYS116B, LYS116E, LYS2B, LYS2E, LYS71E, LYS92B, LYS92E, PHE-2B, PHE-2E, PHE101B, PHE132E, PHE145B, PHE99B, PHE99E, PRO137B, PRO4E, PRO69B, PRO69E, PRO95B, PRO95E, SER114B, SER114E, THR111B, THR111E, TYR-3B, TYR121B, TYR121E, TYR143B, TYR143E, TYR48E, TYR68E, TYR91B, TYR91E, TYR94B, TYR94E, VAL93B, VAL93E
• B-F: GLY106F, LEU104F, LYS105F, LYS115B, LYS116B, LYS92B, SER127F, TYR91B
• C-D: ALA19C, ALA19D, ALA26C, ALA26D, ARG102C, ARG102D, ARG108C, ARG17D, ASN25C, ASN25D, ASP70C, ASP70D, ASP98C, ASP98D, GLN-1D, GLN67C, GLN67D, GLU149C, GLU149D, GLU150C, GLU150D, GLU21C, GLU21D, GLU31C, GLU31D, GLU34C, GLU34D, GLU35D, GLY0D, GLY100C, GLY100D, GLY128C, GLY128D, GLY24C, GLY24D, GLY80C, HIS72C, HIS72D, ILE131C, ILE131D, ILE20C, ILE27C, ILE27D, ILE28C, ILE28D, ILE3D, ILE66C, ILE66D, ILE96C, ILE96D, LEU-4D, LEU104C, LEU104D, LEU109C, LEU148C, LEU148D, LEU30C, LEU30D, LEU60C, LEU65C, LEU65D, LEU74C, LEU74D, LEU77C, LEU77D, LEU83C, LEU83D, LYS105C, LYS22C, LYS22D, LYS2D, LYS71C, LYS71D, LYS78C, LYS78D, LYS82C, PHE-2D, PHE101C, PHE101D, PHE132D, PHE29C, PHE29D, PHE99C, PHE99D, PRO4D, PRO69C, PRO69D, PRO95C, PRO95D, SER127C, THR129C, THR129D, THR73C, THR73D, THR75C, THR75D, THR81C, THR81D, TYR-3D, TYR107C, TYR107D, TYR36D, TYR48D, TYR68C, TYR68D, TYR76C, TYR76D, VAL103C, VAL103D, VAL130C, VAL130D, VAL18C, VAL18D, VAL64C
• C-E: ALA52C, ALA52E, ALA88C, ALA88E, ASN134E, ASN142C, ASN142E, ASP50C, ASP58C, ASP58E, GLU135E, GLU139C, GLU139E, GLU89C, GLU89E, GLY80C, ILE136C, ILE136E, LEU57C, LEU57E, LEU60C, LYS61C, LYS61E, LYS62C, LYS82C, PHE145C, PHE145E, PRO137E, PRO87C, PRO87E, SER138C, SER138E, SER56C, SER56E, SER85C, SER85E, THR59C, THR59E, TYR143C, TYR143E, TYR146C, TYR146E, VAL144C, VAL144E, VAL86C, VAL86E
• E-F: ALA19E, ALA19F, ALA26E, ALA26F, ALA79E, ARG102E, ARG102F, ARG108E, ARG108F, ARG17E, ASN25E, ASN25F, ASP70E, ASP70F, ASP98E, ASP98F, GLN67E, GLN67F, GLU149E, GLU149F, GLU150E, GLU150F, GLU21E, GLU21F, GLU31E, GLU31F, GLU35E, GLY100E, GLY100F, GLY106E, GLY128E, GLY128F, GLY24E, GLY24F, GLY80E, HIS72E, HIS72F, ILE131E, ILE131F, ILE27E, ILE27F, ILE28E, ILE28F, ILE3F, ILE66E, ILE66F, ILE96E, ILE96F, LEU104E, LEU104F, LEU109F, LEU148E, LEU148F, LEU30E, LEU30F, LEU60E, LEU65E, LEU65F, LEU74E, LEU74F, LEU77E, LEU77F, LEU83E, LYS105E, LYS105F, LYS22E, LYS22F, LYS2F, LYS32E, LYS71E, LYS71F, LYS78E, LYS78F, LYS82E, PHE101E, PHE101F, PHE145F, PHE29E, PHE29F, PHE99E, PHE99F, PRO4F, PRO69F, SER127E, SER127F, THR129E, THR129F, THR73E, THR73F, THR75E, THR75F, THR81E, THR81F, TYR107E, TYR107F, TYR36E, TYR68E, TYR68F, TYR76E, TYR76F, VAL103E, VAL103F, VAL130E, VAL130F, VAL18E, VAL18F, VAL64E