3D1F

crystal structure of e. coli sliding clamp (beta) bound to a polymerase iii peptide

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 133
  • Norm. En. per Res.: -5.7801
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-170.9958	-207.773	-389.99	-768.7587	133	22	6	14987	15	59	48
A-P	-50.2698	-29.0565	-187.445	-266.7713	57	14	4	7071	2	22	7
B-Q	-38.1376	-42.2787	-188.269	-268.6853	57	11	4	6992	4	22	7

Interface residues

• A-B: ALA266A, ALA266B, ALA268A, ALA268B, ALA270A, ALA270B, ALA271A, ALA271B, ALA294A, ALA294B, ALA302A, ALA302B, ALA86A, ALA86B, ARG100A, ARG100B, ARG103A, ARG103B, ARG105A, ARG105B, ARG24B, ARG269A, ARG269B, ARG279A, ARG279B, ARG73A, ARG73B, ARG7A, ARG7B, ARG80A, ARG80B, ARG96A, ARG96B, ASN288A, ASN288B, ASN295A, ASN295B, ASN296A, ASN296B, ASP261A, ASP261B, ASP307A, ASP307B, ASP77A, ASP77B, CYS79A, CYS79B, GLN265A, GLN265B, GLN289A, GLN289B, GLN299A, GLN299B, GLU276A, GLU276B, GLU298A, GLU298B, GLU300A, GLU300B, GLU301A, GLU301B, GLU303A, GLU303B, GLU304A, GLU304B, GLU84A, GLU84B, GLU95A, GLU95B, GLY102A, GLY102B, GLY81A, GLY81B, ILE272A, ILE272B, ILE292A, ILE292B, ILE305A, ILE305B, ILE78A, ILE78B, LEU108A, LEU108B, LEU262A, LEU262B, LEU273A, LEU273B, LEU290A, LEU290B, LEU306A, LEU306B, LEU82A, LEU82B, LEU98A, LEU98B, LYS291A, LYS291B, LYS74A, LYS74B, MET97A, MET97B, PHE106A, PHE106B, PHE75A, PHE75B, PHE76A, PHE76B, PRO297A, PRO297B, PRO71A, PRO71B, PRO83A, PRO83B, SER101A, SER101B, SER104A, SER104B, SER107A, SER107B, SER109A, SER109B, SER274A, SER274B, THR110A, THR110B, THR293A, THR293B, VAL308A, VAL308B, VAL70A, VAL70B, VAL99A, VAL99B
• A-P: ALA171A, ALA178A, ARG152A, ARG176A, ARG240A, ARG245A, ARG246A, ARG279A, ARG365A, ASN275A, ASN320A, ASP10P, ASP173A, ASP243A, ASP342A, GLN4P, GLU3P, GLU6P, GLU8P, GLY174A, GLY280A, GLY318A, HIS175A, ILE317A, LEU155A, LEU177A, LEU248A, LEU366A, LEU7P, LYS250A, LYS277A, MET362A, MET364A, PHE241A, PHE278A, PHE319A, PHE9P, PRO242A, PRO249A, PRO363A, SER145A, SER2P, SER343A, SER345A, SER346A, THR172A, TYR154A, TYR244A, TYR323A, VAL170A, VAL247A, VAL321A, VAL344A, VAL347A, VAL360A, VAL361A, VAL5P
• B-Q: ALA171B, ALA178B, ARG152B, ARG176B, ARG245B, ARG246B, ARG279B, ARG282B, ARG365B, ASN275B, ASN320B, ASP10Q, ASP173B, ASP243B, ASP342B, GLN4Q, GLU3Q, GLU6Q, GLU8Q, GLY174B, GLY280B, GLY318B, HIS175B, ILE317B, LEU155B, LEU177B, LEU248B, LEU366B, LEU7Q, LYS250B, LYS277B, MET362B, MET364B, PHE241B, PHE278B, PHE319B, PHE9Q, PRO242B, PRO249B, PRO363B, SER145B, SER2Q, SER343B, SER345B, SER346B, THR172B, TYR154B, TYR244B, TYR323B, VAL170B, VAL247B, VAL321B, VAL344B, VAL347B, VAL360B, VAL361B, VAL5Q