3D18

crystal structure of hla-b*2709 complexed with a variant of the latent membrane protein 2 peptide (lmp2(l)) of epstein-barr virus

• Total interactions analyzed: 3
• Total true interactions: 2
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 91
  • Norm. En. per Res.: -4.3548
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-32.6173	-67.2489	-361.46	-461.3262	123	4	2	12838	2	44	44
A-C	-52.4944	-32.9526	-310.844	-396.291	91	16	1	10563	3	37	43

Interface residues

• A-B: ALA117A, ALA125A, ALA236A, ALA246A, ARG111A, ARG12B, ARG14A, ARG17A, ARG202A, ARG21A, ARG234A, ARG239A, ARG35A, ARG3B, ARG48A, ARG6A, ARG97B, ASN24B, ASN97A, ASP119A, ASP122A, ASP238A, ASP30A, ASP34B, ASP37A, ASP53B, ASP59B, ASP96B, ASP98B, CYS25B, GLN115A, GLN242A, GLN2B, GLN87A, GLN8B, GLN96A, GLU229A, GLU232A, GLU46A, GLY120A, GLY207A, GLY237A, GLY26A, GLY29B, GLY91A, HIS114A, HIS116A, HIS13B, HIS188A, HIS191A, HIS192A, HIS31B, HIS51B, HIS93A, HIS9A, ILE124A, ILE1B, ILE23A, ILE7B, LEU206A, LEU230A, LEU32A, LEU54B, LEU64B, LEU65B, LEU95A, LYS121A, LYS186A, LYS243A, LYS58B, LYS6B, MET0B, MET98A, MET99B, PHE22A, PHE22B, PHE241A, PHE30B, PHE36A, PHE56B, PHE62B, PHE8A, PRO14B, PRO235A, PRO32B, SER11A, SER11B, SER13A, SER28B, SER33B, SER52B, SER55B, SER57B, SER61B, SER92A, THR10A, THR190A, THR200A, THR233A, THR240A, THR24A, THR94A, TRP204A, TRP244A, TRP60B, TRP95B, TYR10B, TYR113A, TYR118A, TYR123A, TYR26B, TYR27A, TYR63B, TYR66B, TYR67B, TYR7A, TYR99A, VAL12A, VAL231A, VAL25A, VAL27B, VAL34A, VAL9B
• A-C: ALA139A, ALA140A, ALA150A, ALA153A, ALA158A, ALA69A, ARG151A, ARG157A, ARG170A, ARG1C, ARG2C, ARG35A, ARG3C, ARG5C, ARG62A, ARG6A, ARG6C, ARG75A, ARG79A, ARG83A, ASN97A, ASP61A, ASP74A, ASP77A, CYS164A, CYS67A, GLN144A, GLN155A, GLN65A, GLN72A, GLU154A, GLU163A, GLU166A, GLU45A, GLU46A, GLU55A, GLU58A, GLU63A, GLU76A, GLY100A, GLY26A, HIS114A, HIS116A, HIS9A, ILE124A, ILE142A, ILE23A, ILE52A, ILE66A, LEU156A, LEU160A, LEU168A, LEU32A, LEU78A, LEU7C, LEU81A, LEU95A, LEU9C, LYS146A, LYS68A, LYS70A, MET5A, PHE22A, PHE33A, PHE36A, PHE8A, THR143A, THR24A, THR64A, THR73A, THR80A, THR8C, TRP133A, TRP147A, TRP167A, TRP4C, TRP51A, TRP60A, TYR118A, TYR123A, TYR159A, TYR171A, TYR27A, TYR59A, TYR7A, TYR84A, TYR99A, VAL152A, VAL25A, VAL28A, VAL34A