3D12

crystal structures of nipah virus g attachment glycoprotein in complex with its receptor ephrin-b3

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: D-E
  • Int. Res.: 133
  • Norm. En. per Res.: -4.228
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-75.3373	-87.6687	-387.604	-550.6099	132	30	3	14198	7	29	25
A-D	-3.1362	-4.9571	-116.071	-124.1643	83	9	6	5660	0	10	13
D-E	-87.8059	-68.1092	-406.412	-562.3271	133	23	3	13986	6	28	25

Interface residues

• A-B: ALA456A, ALA532A, ALA558A, ALA97B, ARG106B, ARG112B, ARG130B, ARG145B, ARG236A, ARG242A, ARG402A, ARG487A, ARG495A, ARG57B, ARG589A, ARG66B, ASN123B, ASN306A, ASN394A, ASN404A, ASN497A, ASN509A, ASN529A, ASN534A, ASN557A, ASN99B, ASP105B, ASP108B, ASP219A, ASP302A, ASP555A, ASP56B, ASP582A, ASP59B, CYS104B, CYS216A, CYS240A, CYS387A, CYS493A, CYS499A, CYS503A, GLN118B, GLN388A, GLN490A, GLN492A, GLN530A, GLN53B, GLN559A, GLU119B, GLU128B, GLU501A, GLU505A, GLU533A, GLU554A, GLU579A, GLU85B, GLY126B, GLY238A, GLY243A, GLY400A, GLY439A, GLY489A, GLY506A, GLY55B, GLY584A, HIS127B, ILE115B, ILE217A, ILE304A, ILE401A, ILE438A, ILE502A, ILE54B, ILE580A, ILE588A, LEU100B, LEU101B, LEU102B, LEU109B, LEU111B, LEU124B, LEU305A, LEU409A, LEU526A, LEU58B, LEU60B, LEU81B, LYS116B, LYS391A, LYS560A, LYS80B, PHE113B, PHE117B, PHE129B, PHE458A, PHE78B, PRO107B, PRO122B, PRO220A, PRO403A, PRO441A, PRO488A, PRO494A, PRO500A, PRO535A, PRO590A, SER121B, SER239A, SER241A, SER390A, SER405A, SER440A, SER457A, SER459A, SER491A, SER528A, THR103B, THR114B, THR218A, THR531A, THR556A, THR583A, TRP125B, TRP504A, TYR120B, TYR135B, TYR351A, TYR389A, TYR508A, TYR581A, VAL507A, VAL578A
• A-D: ARG516A, ARG516D, ASN186A, ASN186D, ASN187A, ASN187D, ASN417A, ASN473A, ASN473D, ASN478A, ASN478D, ASN518D, ASN570A, ASN570D, ASP360A, ASP360D, ASP446A, ASP446D, ASP468A, ASP468D, GLN358A, GLN358D, GLN450A, GLN450D, GLY183A, GLY183D, GLY359A, GLY359D, GLY449A, GLY449D, ILE356A, ILE356D, ILE444A, ILE444D, ILE517A, ILE517D, LEU181A, LEU181D, LEU184A, LEU184D, LEU190A, LEU413A, LEU413D, LEU448A, LEU448D, LEU470A, LEU470D, LEU475A, LEU475D, LEU567A, LEU567D, LYS357A, LYS357D, LYS569A, LYS569D, PRO185A, PRO185D, PRO451A, PRO451D, PRO474A, PRO474D, SER179A, SER179D, SER419A, SER419D, SER447A, SER447D, THR361A, THR361D, THR471A, THR471D, TYR363A, TYR363D, VAL182A, VAL182D, VAL452A, VAL452D, VAL469A, VAL469D, VAL472A, VAL472D, VAL476A, VAL476D
• D-E: ALA456D, ALA532D, ALA558D, ALA97E, ARG106E, ARG112E, ARG130E, ARG145E, ARG236D, ARG242D, ARG402D, ARG487D, ARG495D, ARG57E, ARG589D, ARG66E, ASN123E, ASN306D, ASN394D, ASN404D, ASN497D, ASN529D, ASN534D, ASN557D, ASN99E, ASP105E, ASP108E, ASP219D, ASP302D, ASP555D, ASP56E, ASP582D, ASP59E, CYS216D, CYS240D, CYS387D, CYS493D, CYS499D, CYS503D, GLN118E, GLN388D, GLN490D, GLN492D, GLN530D, GLN53E, GLN559D, GLU119E, GLU128E, GLU501D, GLU505D, GLU533D, GLU554D, GLU579D, GLU85E, GLY126E, GLY214D, GLY238D, GLY243D, GLY400D, GLY439D, GLY489D, GLY506D, GLY55E, GLY584D, HIS127E, ILE115E, ILE217D, ILE304D, ILE401D, ILE438D, ILE502D, ILE54E, ILE580D, ILE588D, LEU100E, LEU101E, LEU102E, LEU109E, LEU111E, LEU124E, LEU305D, LEU409D, LEU526D, LEU58E, LEU60E, LYS116E, LYS391D, LYS560D, LYS591D, LYS80E, PHE113E, PHE117E, PHE129E, PHE458D, PHE78E, PRO107E, PRO122E, PRO220D, PRO403D, PRO441D, PRO488D, PRO494D, PRO500D, PRO535D, PRO590D, SER121E, SER239D, SER241D, SER307D, SER390D, SER405D, SER440D, SER457D, SER459D, SER491D, SER528D, THR103E, THR114E, THR215D, THR218D, THR531D, THR556D, THR583D, TRP125E, TRP504D, TYR120E, TYR351D, TYR389D, TYR508D, TYR581D, TYR76E, VAL507D, VAL578D