3CUE
crystal structure of a trapp subassembly activating the rab ypt1p
Total interactions analyzed 276
Total true interactions 58
Strongest Interaction Chains N-P
Int. Res. 111
Norm. En. per Res. -3.7808
Hub Node B(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -4.4303 0.0 -110.782 -115.2123 52 13 2 5320 0 6 6
A-C -45.2666 -22.6266 -325.016 -392.9092 120 46 8 16294 3 20 10
A-D -12.6932 -7.6031 -233.137 -253.4332 103 35 3 12458 1 36 26
A-F -8.9363 -49.9909 -165.663 -224.5902 88 32 4 9087 3 13 15
B-D -57.0685 -20.1427 -342.331 -419.5423 112 33 14 15720 1 12 14
B-F 0.0 0.0 -0.2933 -0.2933 2 0 0 51 0 1 1
B-Q 0.0 -5.7429 -3.6015 -9.3444 22 0 0 345 0 8 10
B-U -7.4853 0.92 -62.7801 -69.3454 36 0 2 2852 0 6 5
B-W 0.0 4.286 -7.6686 -3.3826 9 1 0 363 0 5 5
C-D 0.0 0.0 -0.0102 -0.0102 3 0 0 11 0 2 0
C-E -3.0062 -26.1101 -180.724 -209.8403 102 39 6 10022 0 27 23
C-F 0.0 7.2407 -24.4845 -17.2438 26 0 2 1388 1 9 5
D-F 0.0 -18.3308 -16.1817 -34.5125 17 4 0 1105 0 11 6
D-J 0.0 4.8922 -4.5265 0.3656 10 0 0 413 0 6 6
D-O 0.0 0.0 -0.2397 -0.2397 2 0 0 20 0 1 0
D-Q -8.8498 -5.9709 -86.4566 -101.2773 43 5 0 3438 0 18 14
E-F -9.8287 6.5646 -42.7138 -45.9779 34 1 0 2257 1 5 10
F-M 0.0 0.0 -0.1014 -0.1014 5 0 0 46 0 9 8
F-N 0.0 -12.5542 -10.4083 -22.9625 18 0 0 557 0 9 7
G-H -4.7904 0.0 -106.111 -110.9014 51 10 2 5234 0 6 6
G-I -53.0648 -22.7645 -325.7 -401.5293 121 49 9 16351 3 20 10
G-J -16.3028 -7.7136 -236.508 -260.5243 102 34 3 12410 1 36 26
G-K 0.0 0.0 -0.0014 -0.0014 2 0 0 1 0 2 0
G-L -5.2813 -49.2932 -153.156 -207.7305 89 29 4 9117 3 13 15
H-J -58.9542 -20.1589 -335.499 -414.612 111 37 14 15673 1 12 14
H-L 0.0 0.0 -0.2981 -0.2981 2 0 0 51 0 1 1
I-J 0.0 0.0 -0.0104 -0.0104 3 0 0 11 0 2 0
I-K 0.0 -25.9139 -182.519 -208.433 103 37 5 10073 0 27 23
I-L 0.0 7.4601 -25.4208 -17.9607 27 1 2 1426 1 9 5
J-L 0.0 -18.0721 -16.7294 -34.8015 16 4 0 1104 0 11 6
K-L -9.7938 6.9604 -39.591 -42.4244 34 1 0 2271 1 5 10
M-N -4.3352 0.0 -111.108 -115.4432 51 10 2 5263 0 6 6
M-O -52.736 -23.0387 -328.205 -403.9797 121 50 8 16376 3 20 10
M-P -15.7456 -7.1048 -237.618 -260.4684 102 36 3 12464 1 37 26
M-Q 0.0 0.0 -0.0014 -0.0014 2 0 0 1 0 2 0
M-R -5.5506 -49.3447 -151.717 -206.6123 90 27 4 9143 3 13 15
N-P -65.3616 -18.8938 -335.417 -419.6724 111 35 14 15663 1 12 14
N-R 0.0 0.0 -0.2966 -0.2966 2 0 0 51 0 1 1
O-P 0.0 0.0 -0.0104 -0.0104 3 0 0 11 0 2 0
O-Q 0.0 -26.0689 -179.31 -205.3789 103 38 5 10045 0 27 23
O-R 0.0 7.6499 -26.0621 -18.4122 27 2 2 1438 1 10 5
O-W -9.4827 -18.442 -123.269 -151.1937 57 19 6 5772 0 11 2
P-R 0.0 -18.3805 -15.8256 -34.2061 16 4 0 1098 0 11 6
Q-R -9.9927 6.8657 -43.3017 -46.4287 34 1 0 2276 1 5 10
Q-U -9.1594 -18.4817 -127.349 -154.99 57 20 6 5773 0 11 2
Q-W -94.4628 13.7136 -299.742 -380.4911 112 45 15 14936 0 26 19
S-T -4.2172 0.0 -110.779 -114.9962 52 13 2 5367 0 6 6
S-U -46.2568 -22.9867 -329.381 -398.6245 121 51 8 16418 3 20 10
S-V -12.126 -7.5511 -238.4 -258.0772 103 32 3 12420 1 35 26
S-W 0.0 0.0 -0.0014 -0.0014 2 0 0 1 0 2 0
S-X -8.8771 -49.41 -164.302 -222.5891 88 31 4 9067 3 13 15
T-V -57.4939 -18.9855 -341.105 -417.5844 111 32 14 15645 1 12 14
T-X 0.0 0.0 -0.3008 -0.3008 2 0 0 51 0 1 1
U-V 0.0 0.0 -0.0102 -0.0102 3 0 0 11 0 2 0
U-W -3.4916 -24.961 -193.014 -221.4666 102 37 5 9983 0 27 23
U-X 0.0 7.2491 -25.5244 -18.2753 26 1 2 1412 1 9 5
V-X 0.0 -18.2997 -15.8583 -34.158 17 4 0 1099 0 11 6
W-X -9.8146 6.8748 -39.5902 -42.5299 34 1 0 2259 1 5 10