3C9V

c7 symmetrized structure of unliganded groel at 4.7 angstrom resolution from cryoem

• Total interactions analyzed: 91
• Total true interactions: 21
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 69
  • Norm. En. per Res.: -0.2055
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-13.5633	-13.5633	71	22	0	1346	0	0	0
A-G	0.0	0.0	-13.9515	-13.9515	68	22	0	1344	0	0	0
A-M	0.0	0.0	-0.0059	-0.0059	2	0	0	5	0	0	0
B-C	0.0	0.0	-14.1826	-14.1826	69	22	0	1358	0	0	0
B-L	0.0	0.0	-0.0059	-0.0059	2	0	0	5	0	0	0
C-D	0.0	0.0	-13.8664	-13.8664	71	24	0	1370	0	0	0
C-K	0.0	0.0	-0.006	-0.006	2	0	0	6	0	0	0
D-E	0.0	0.0	-14.4394	-14.4394	73	23	0	1382	0	0	0
D-J	0.0	0.0	-0.0065	-0.0065	2	0	0	7	0	0	0
E-F	0.0	0.0	-13.9181	-13.9181	71	24	0	1353	0	0	0
E-I	0.0	0.0	-0.01	-0.01	2	0	0	8	0	0	0
F-G	0.0	0.0	-13.8002	-13.8002	73	22	0	1351	0	0	0
F-H	0.0	0.0	-0.0066	-0.0066	2	0	0	7	0	0	0
G-N	0.0	0.0	-0.006	-0.006	2	0	0	6	0	0	0
H-I	0.0	0.0	270.904	270.904	70	32	0	1622	0	0	0
H-N	0.0	0.0	248.669	248.669	70	36	0	1625	0	0	0
I-J	0.0	0.0	244.466	244.466	70	29	0	1634	0	0	0
J-K	0.0	0.0	240.972	240.972	68	31	0	1630	0	0	0
K-L	0.0	0.0	275.419	275.419	73	32	0	1628	0	0	0
L-M	0.0	0.0	253.906	253.906	69	31	0	1635	0	0	0
M-N	0.0	0.0	284.511	284.511	74	31	0	1636	0	0	0

Interface residues

• A-B: ALA26A, ALA2B, ALA383A, ALA384A, ALA3B, ALA46A, ARG36A, ASN21A, ASN229B, ASN37A, ASP115B, ASP185A, ASP25A, ASP283B, ASP359B, ASP41A, ASP523B, ASP5B, CYS519B, GLN184A, GLN72B, GLU518B, GLU61A, GLU63A, GLU76B, GLY19A, GLY282B, GLY35A, GLY459A, GLY45A, GLY512B, GLY70B, ILE49A, ILE515B, ILE60A, LEU183A, LEU23A, LEU40A, LEU513B, LEU524B, LEU62A, LYS117B, LYS34A, LYS42A, LYS4B, LYS51A, LYS7B, MET114B, MET267A, MET514B, MET520B, MET69B, MET73B, PHE281B, PHE44A, PRO113B, SER228B, SER43A, THR266A, THR385A, THR50A, THR516B, THR517B, THR522B, TYR360B, VAL22A, VAL38A, VAL39A, VAL521B, VAL6B, VAL77B
• A-G: ALA26G, ALA2A, ALA383G, ALA384G, ALA3A, ALA46G, ARG36G, ASN112A, ASN21G, ASN37G, ASP115A, ASP185G, ASP25G, ASP283A, ASP359A, ASP41G, ASP523A, ASP5A, CYS519A, GLN184G, GLN72A, GLU518A, GLU61G, GLU63G, GLU76A, GLY19G, GLY282A, GLY35G, GLY459G, GLY45G, GLY512A, GLY70A, ILE49G, ILE515A, ILE60G, LEU183G, LEU23G, LEU40G, LEU513A, LEU524A, LEU62G, LYS34G, LYS42G, LYS4A, LYS51G, LYS7A, MET114A, MET267G, MET514A, MET520A, MET69A, MET73A, PHE281A, PHE44G, PRO113A, SER228A, THR385G, THR50G, THR516A, THR517A, THR522A, TYR360A, VAL22G, VAL38G, VAL39G, VAL521A, VAL6A, VAL77A
• A-M: ALA466A, ALA466M
• B-C: ALA26B, ALA2C, ALA383B, ALA384B, ALA3C, ALA46B, ARG284C, ARG36B, ASN112C, ASN21B, ASN37B, ASP115C, ASP185B, ASP25B, ASP283C, ASP359C, ASP41B, ASP523C, ASP5C, CYS519C, GLN184B, GLN72C, GLU518C, GLU61B, GLU63B, GLU76C, GLY19B, GLY282C, GLY35B, GLY459B, GLY45B, GLY512C, GLY70C, ILE49B, ILE515C, ILE60B, LEU183B, LEU23B, LEU40B, LEU513C, LEU524C, LEU62B, LYS34B, LYS42B, LYS4C, LYS51B, LYS7C, MET114C, MET267B, MET514C, MET520C, MET69C, MET73C, PHE281C, PHE44B, PRO113C, SER228C, THR385B, THR50B, THR516C, THR517C, THR522C, TYR360C, VAL22B, VAL38B, VAL39B, VAL521C, VAL6C, VAL77C
• B-L: ALA466B, ALA466L
• C-D: ALA26C, ALA2D, ALA383C, ALA384C, ALA3D, ALA46C, ARG36C, ASN21C, ASN229D, ASN37C, ASP115D, ASP185C, ASP25C, ASP283D, ASP359D, ASP41C, ASP523D, ASP5D, CYS519D, GLN184C, GLN72D, GLU518D, GLU61C, GLU63C, GLU76D, GLY19C, GLY282D, GLY35C, GLY459C, GLY45C, GLY512D, GLY70D, ILE49C, ILE515D, ILE60C, LEU183C, LEU23C, LEU40C, LEU513D, LEU524D, LEU62C, LYS117D, LYS34C, LYS42C, LYS4D, LYS51C, LYS7D, MET114D, MET267C, MET514D, MET520D, MET69D, MET73D, PHE281D, PHE44C, PRO113D, SER228D, SER43C, THR266C, THR385C, THR50C, THR516D, THR517D, THR522D, TYR360D, VAL22C, VAL38C, VAL39C, VAL521D, VAL6D, VAL77D
• C-K: ALA466C, ALA466K
• D-E: ALA26D, ALA2E, ALA383D, ALA384D, ALA3E, ALA46D, ARG284E, ARG36D, ASN112E, ASN21D, ASN229E, ASN37D, ASP115E, ASP185D, ASP25D, ASP283E, ASP359E, ASP41D, ASP523E, ASP5E, CYS519E, GLN184D, GLN72E, GLU518E, GLU61D, GLU63D, GLU76E, GLY19D, GLY282E, GLY35D, GLY459D, GLY45D, GLY512E, GLY70E, ILE49D, ILE515E, ILE60D, LEU183D, LEU23D, LEU40D, LEU513E, LEU524E, LEU62D, LYS34D, LYS42D, LYS4E, LYS51D, LYS7E, MET114E, MET267D, MET514E, MET520E, MET69E, MET73E, PHE281E, PHE44D, PRO113E, PRO33D, SER228E, SER43D, THR266D, THR385D, THR50D, THR516E, THR517E, THR522E, TYR360E, VAL22D, VAL38D, VAL39D, VAL521E, VAL6E, VAL77E
• D-J: ALA466D, ALA466J
• E-F: ALA26E, ALA2F, ALA383E, ALA384E, ALA3F, ALA46E, ARG36E, ASN112F, ASN21E, ASN37E, ASP115F, ASP185E, ASP25E, ASP283F, ASP359F, ASP41E, ASP523F, ASP5F, CYS519F, GLN184E, GLN72F, GLU518F, GLU61E, GLU63E, GLU76F, GLY19E, GLY282F, GLY35E, GLY459E, GLY45E, GLY512F, GLY70F, ILE49E, ILE515F, ILE60E, LEU183E, LEU23E, LEU40E, LEU513F, LEU524F, LEU62E, LYS117F, LYS34E, LYS42E, LYS4F, LYS51E, LYS7F, MET114F, MET267E, MET514F, MET520F, MET69F, MET73F, PHE281F, PHE44E, PRO113F, SER228F, SER43E, THR266E, THR385E, THR50E, THR516F, THR517F, THR522F, TYR360F, VAL22E, VAL38E, VAL39E, VAL521F, VAL6F, VAL77F
• E-I: ALA466E, ALA466I
• F-G: ALA26F, ALA2G, ALA383F, ALA384F, ALA3G, ALA46F, ARG284G, ARG36F, ASN21F, ASN229G, ASN37F, ASP115G, ASP185F, ASP25F, ASP283G, ASP359G, ASP41F, ASP523G, ASP5G, CYS519G, GLN184F, GLN72G, GLU518G, GLU61F, GLU63F, GLU76G, GLY19F, GLY282G, GLY35F, GLY459F, GLY45F, GLY512G, GLY70G, ILE49F, ILE515G, ILE60F, LEU183F, LEU23F, LEU40F, LEU513G, LEU524G, LEU62F, LYS117G, LYS34F, LYS42F, LYS4G, LYS51F, LYS7G, MET114G, MET267F, MET514G, MET520G, MET69G, MET73G, PHE281G, PHE44F, PRO113G, PRO33F, SER228G, SER43F, THR266F, THR385F, THR50F, THR516G, THR517G, THR522G, TYR360G, VAL22F, VAL38F, VAL39F, VAL521G, VAL6G, VAL77G
• F-H: ALA466F, ALA466H
• G-N: ALA466G, ALA466N
• H-I: ALA26H, ALA2I, ALA3I, ALA46H, ALA511I, ALA78I, ARG36H, ASN112I, ASN37H, ASN68H, ASP41H, ASP523I, ASP52H, ASP5I, ASP64H, CYS458H, CYS519I, GLU518I, GLU61H, GLU63H, GLU76I, GLY182H, GLY19H, GLY244H, GLY282I, GLY35H, GLY459H, GLY512I, GLY70I, ILE515I, ILE60H, LEU23H, LEU40H, LEU513I, LEU524I, LEU62H, LYS225I, LYS226I, LYS34H, LYS42H, LYS51H, LYS80I, MET114I, MET514I, MET520I, MET69I, MET73I, PHE281I, PHE44H, PHE66I, PRO113I, PRO33H, PRO47H, SER43H, SER79I, THR181H, THR48H, THR50H, THR516I, THR517I, THR522I, VAL22H, VAL27H, VAL29H, VAL38H, VAL39H, VAL510I, VAL521I, VAL6I, VAL77I
• H-N: ALA26N, ALA2H, ALA3H, ALA46N, ALA481N, ALA511H, ARG36N, ASN112H, ASN37N, ASN68N, ASP115H, ASP41N, ASP523H, ASP52N, ASP5H, ASP64N, CYS519H, GLU518H, GLU61N, GLU63N, GLU76H, GLY182N, GLY244N, GLY282H, GLY35N, GLY459N, GLY512H, GLY70H, ILE230H, ILE515H, ILE60N, LEU23N, LEU40N, LEU513H, LEU524H, LEU62N, LYS225H, LYS226H, LYS242N, LYS34N, LYS42N, LYS51N, LYS80H, MET114H, MET514H, MET520H, MET69H, MET73H, PHE281H, PHE66H, PRO113H, PRO33N, PRO47N, SER43N, SER79H, THR181N, THR48N, THR50N, THR516H, THR517H, THR522H, VAL22N, VAL27N, VAL29N, VAL38N, VAL39N, VAL510H, VAL521H, VAL6H, VAL77H
• I-J: ALA26I, ALA2J, ALA3J, ALA46I, ALA481I, ALA511J, ARG36I, ASN112J, ASN37I, ASN68I, ASP115J, ASP41I, ASP523J, ASP52I, ASP5J, ASP64I, CYS519J, GLU518J, GLU61I, GLU63I, GLU76J, GLY182I, GLY244I, GLY282J, GLY35I, GLY459I, GLY512J, GLY70J, ILE230J, ILE515J, ILE60I, LEU23I, LEU40I, LEU513J, LEU524J, LEU62I, LYS225J, LYS226J, LYS242I, LYS34I, LYS42I, LYS51I, LYS80J, MET114J, MET514J, MET520J, MET69J, MET73J, PHE281J, PHE66J, PRO113J, PRO33I, PRO47I, SER43I, SER79J, THR181I, THR48I, THR50I, THR516J, THR517J, THR522J, VAL22I, VAL27I, VAL29I, VAL38I, VAL39I, VAL510J, VAL521J, VAL6J, VAL77J
• J-K: ALA26J, ALA2K, ALA3K, ALA46J, ALA511K, ALA78K, ARG36J, ASN112K, ASN37J, ASN68J, ASP41J, ASP523K, ASP52J, ASP5K, ASP64J, CYS458J, CYS519K, GLU518K, GLU61J, GLU63J, GLU76K, GLY182J, GLY19J, GLY244J, GLY282K, GLY35J, GLY459J, GLY512K, GLY70K, ILE515K, ILE60J, LEU23J, LEU40J, LEU513K, LEU524K, LEU62J, LYS225K, LYS34J, LYS42J, LYS51J, LYS80K, MET114K, MET514K, MET520K, MET69K, MET73K, PHE281K, PHE66K, PRO113K, PRO33J, PRO47J, SER43J, SER79K, THR181J, THR48J, THR50J, THR516K, THR517K, THR522K, VAL22J, VAL27J, VAL29J, VAL38J, VAL39J, VAL510K, VAL521K, VAL6K, VAL77K
• K-L: ALA26K, ALA2L, ALA3L, ALA46K, ALA481K, ALA511L, ARG36K, ASN112L, ASN37K, ASN68K, ASP115L, ASP41K, ASP523L, ASP52K, ASP5L, ASP64K, CYS458K, CYS519L, GLU518L, GLU61K, GLU63K, GLU76L, GLY182K, GLY19K, GLY244K, GLY282L, GLY35K, GLY459K, GLY512L, GLY70L, ILE230L, ILE515L, ILE60K, LEU23K, LEU40K, LEU513L, LEU524L, LEU62K, LYS225L, LYS226L, LYS242K, LYS34K, LYS42K, LYS51K, LYS80L, MET114L, MET514L, MET520L, MET69L, MET73L, PHE281L, PHE44K, PHE66L, PRO113L, PRO33K, PRO47K, SER43K, SER79L, THR181K, THR48K, THR50K, THR516L, THR517L, THR522L, VAL22K, VAL27K, VAL29K, VAL38K, VAL39K, VAL510L, VAL521L, VAL6L, VAL77L
• L-M: ALA26L, ALA2M, ALA3M, ALA46L, ALA481L, ALA511M, ALA78M, ARG36L, ASN112M, ASN37L, ASN68L, ASP115M, ASP41L, ASP523M, ASP52L, ASP5M, ASP64L, CYS519M, GLU518M, GLU61L, GLU63L, GLU76M, GLY182L, GLY244L, GLY282M, GLY35L, GLY459L, GLY512M, GLY70M, ILE515M, ILE60L, LEU23L, LEU40L, LEU513M, LEU524M, LEU62L, LYS225M, LYS226M, LYS34L, LYS42L, LYS51L, LYS80M, MET114M, MET514M, MET520M, MET69M, MET73M, PHE281M, PHE66M, PRO113M, PRO33L, PRO47L, SER43L, SER79M, THR181L, THR48L, THR50L, THR516M, THR517M, THR522M, VAL22L, VAL27L, VAL29L, VAL38L, VAL39L, VAL510M, VAL521M, VAL6M, VAL77M
• M-N: ALA26M, ALA2N, ALA3N, ALA46M, ALA481M, ALA511N, ALA78N, ARG36M, ASN112N, ASN37M, ASN68M, ASP115N, ASP41M, ASP523N, ASP52M, ASP5N, ASP64M, CYS458M, CYS519N, GLU518N, GLU61M, GLU63M, GLU76N, GLY182M, GLY19M, GLY244M, GLY282N, GLY35M, GLY459M, GLY512N, GLY70N, ILE230N, ILE515N, ILE60M, LEU23M, LEU40M, LEU513N, LEU524N, LEU62M, LYS225N, LYS226N, LYS242M, LYS34M, LYS42M, LYS51M, LYS80N, MET114N, MET514N, MET520N, MET69N, MET73N, PHE281N, PHE44M, PHE66N, PRO113N, PRO33M, PRO47M, SER43M, SER79N, THR181M, THR48M, THR50M, THR516N, THR517N, THR522N, VAL22M, VAL27M, VAL29M, VAL38M, VAL39M, VAL510N, VAL521N, VAL6N, VAL77N