3BSU

hybrid-binding domain of human rnase h1 in complex with 12- mer rna/dna

• Total interactions analyzed: 45
• Total true interactions: 10
• Strongest Interaction:
  • Chains: C-H
  • Int. Res.: 9
  • Norm. En. per Res.: -0.3661
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-0.276	-0.276	6	0	0	77	0	1	2
A-C	0.0	0.0	-0.4152	-0.4152	9	0	0	106	0	0	1
A-F	0.0	19.5686	-24.741	-5.1724	21	2	0	894	0	3	5
A-G	0.0	0.0	-0.0169	-0.0169	2	0	0	3	0	0	0
B-G	0.0	2.3562	-0.9346	1.4216	9	0	0	145	0	3	1
C-H	0.0	0.0	-3.2948	-3.2948	9	0	1	315	0	5	0
D-F	0.0	0.0	1975.94	1975.94	16	172	0	2325	0	0	0
D-G	0.0	0.0	-0.0171	-0.0171	3	0	0	9	0	0	0
F-G	0.0	0.0	-0.2171	-0.2171	7	0	0	78	0	1	2
F-H	0.0	0.0	-0.8741	-0.8741	7	0	0	152	0	1	1

Interface residues

• A-B: ALA55A, ARG47B, ARG57A, ASN44B, LYS73A, TRP43B
• A-C: ALA55C, ARG32C, ARG33C, ARG47A, ARG57C, ASN44A, LYS59C, MET27A, TRP43A
• A-F: ALA48F, ALA55F, ALA62A, ARG35F, ARG52F, ASP51F, CB6.9312520.65498, CB9.9141457.61956, GLN49F, GLU64A, GLU66A, GLY34F, HIS26A, HIS26A5, MET27A, PHE28A, PHE53F, PHE61A, PRO54F, THR63A, VAL50F
• A-G: ARG52G, GLU66A
• B-G: ALA55G, ALA62B, ARG52G, HIS26B, LEU41B, MET27B, PHE28B, PRO54G, THR63B
• C-H: ALA55H, ALA62C, ARG33H, LYS60C, MET27C, PHE28C, PHE53H, PRO54H, THR63C
• D-F: ALA30F, ALA55F, ALA56F, ALA69F, ARG32F, ARG33F, ARG57F, ARG72F, B0D0D, LYS59F, LYS73F, PHE58F, PHE70F, VAL31F, VAL50F, VAL71F
• D-G: ARG47G, B0D0D, TRP43G
• F-G: ALA55F, ARG33F, ARG47G, ARG57F, LYS59F, SER25G, TRP43G
• F-H: ALA55H, ARG32H, ARG33H, ARG47F, ARG57H, ASN44F, TRP43F