3BBO

homology model for the spinach chloroplast 50s subunit fitted to 9.4a cryo-em map of the 70s chlororibosome

• Total interactions analyzed: 496
• Total true interactions: 31
• Strongest Interaction:
  • Chains: Q-X
  • Int. Res.: 30
  • Norm. En. per Res.: -3.7917
• Hub Node: G(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
D-J	0.0	0.0	-7.0264	-7.0264	11	1	0	469	0	3	3
F-L	-11.5265	6.2378	-24.2559	-29.5446	12	8	0	1010	0	0	5
F-M	0.0	0.0	-0.0703	-0.0703	3	0	0	25	0	2	1
F-P	0.0	0.5323	-3.3308	-2.7984	8	0	0	225	0	0	6
F-R	0.0	0.0	-31.1605	-31.1605	16	5	1	1587	0	3	6
G-N	-14.5087	7.762	-88.2158	-94.9626	46	17	0	3989	0	7	26
G-S	0.0	0.0	-15.5081	-15.5081	12	0	0	963	0	0	0
G-U	0.0	0.0	-1.486	-1.486	6	0	0	158	0	0	4
G-4	0.0	0.0	-0.0023	-0.0023	2	0	0	1	0	0	1
H-1	-12.784	2.9855	-166.125	-175.9236	79	28	0	7712	0	27	25
I-L	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	1	0
I-6	-10.7409	0.0	-10.4379	-21.1788	14	1	0	581	0	2	7
J-Y	0.0	-5.2761	-5.524	-10.8001	16	0	0	640	0	2	5
K-O	0.0	0.0	-0.006	-0.006	2	0	0	2	0	1	0
L-S	-5.9301	4.134	-94.871	-96.6671	42	13	6	4314	0	5	8
L-6	0.0	0.0	-0.0019	-0.0019	3	0	0	2	0	0	1
M-R	-9.5304	-15.5476	-146.999	-172.077	78	18	6	7437	2	19	27
N-S	0.0	0.0	-0.1215	-0.1215	5	0	0	28	0	0	0
N-T	0.0	0.0	-5.8699	-5.8699	8	0	0	214	0	0	3
N-5	-20.9631	75.3199	-241.832	-187.4751	54	44	1	9455	0	9	39
O-X	0.0	0.0	-0.0189	-0.0189	3	0	0	8	0	0	0
P-U	0.0	0.0	-6.0749	-6.0749	15	0	0	590	0	4	2
P-2	-9.0062	0.0	-28.8222	-37.8284	31	2	0	2187	0	2	6
Q-X	-16.8519	-25.3202	-71.5803	-113.7524	30	11	0	2779	2	24	28
S-T	-13.5045	10.9752	-249.683	-252.2123	93	36	13	10864	0	5	30
S-2	0.0	0.0	-0.624	-0.624	8	0	1	87	0	0	4
U-2	-13.5808	-0.3155	-88.999	-102.8953	44	17	3	4374	0	19	21
V-Z	0.0	0.0	-75.0622	-75.0622	48	8	2	3920	0	4	4
X-3	0.0	1.8478	-0.1691	1.6787	5	0	0	43	0	0	3
X-5	0.0	0.0	-0.0991	-0.0991	4	0	0	30	0	0	1
3-5	0.0	9.3638	-22.9684	-13.6046	20	3	0	1321	0	2	13

Interface residues

• D-J: ALA118J, ARG116D, ARG118D, ASP185J, GLN115J, GLN116J, LYS107J, MET119J, THR117D, THR187J, VAL186J
• F-L: ARG179L, ARG197F, GLY178L, GLY181L, GLY182L, GLY201F, HIS176L, LYS200F, LYS202F, PRO180L, SER177L, TYR199F
• F-M: ARG31M, ASN29M, PHE171F
• F-P: ARG91P, GLY159F, GLY161F, HIS92P, ILE158F, LYS160F, LYS239F, MET90P
• F-R: ASN127R, ASN228F, ASP121R, ASP224F, ASP225F, GLN226F, ILE122R, ILE229F, ILE230F, LEU126R, LEU227F, LYS128R, LYS222F, MET123R, MET231F, VAL131R
• G-N: ALA168G, ALA242G, ALA80G, ALA82G, ALA94N, ARG67N, ARG78N, ARG80N, ARG81G, ARG83N, ARG86G, ASN171G, ASN235G, ASN241G, ASP238G, GLN74N, GLU156G, GLU203G, GLU243G, GLY76N, GLY85N, HIS85G, ILE89G, LEU199G, LEU206G, LEU236G, LEU240G, LEU88G, LEU92G, LYS204G, LYS244G, LYS79N, LYS82N, LYS84N, PHE141G, PHE173G, PHE237G, PRO201G, PRO73N, PRO75N, PRO81N, SER167G, SER77N, VAL239G, VAL83G, VAL84G
• G-S: ALA100G, GLY138G, GLY142G, ILE140G, LEU103G, MET1S, PHE141G, PRO132G, PRO143G, THR102G, THR2S, VAL139G
• G-U: ARG119U, ARG121U, ARG123G, GLY122G, LYS120G, THR121G
• G-4: GLY110G, LYS1334
• H-1: ALA122H, ALA611, ALA73H, ARG107H, ARG117H, ARG125H, ARG127H, ARG18H, ARG79H, ARG961, ASN109H, ASN120H, ASN661, ASN70H, ASP116H, ASP128H, ASP601, ASP66H, CYS651, GLN130H, GLN78H, GLU155H, GLU521, GLU561, GLU591, GLU681, GLU71H, GLU791, GLY108H, GLY131H, GLY189H, GLY671, GLY741, GLY751, GLY77H, HIS541, HIS581, ILE119H, ILE156H, ILE69H, ILE75H, LEU106H, LEU110H, LEU115H, LEU118H, LEU121H, LEU123H, LEU19H, LEU691, LEU74H, LYS157H, LYS20H, LYS511, LYS621, LYS771, LYS781, MET111H, MET711, PHE114H, PHE129H, PHE153H, PHE192H, PHE571, PRO124H, PRO154H, PRO191H, PRO551, SER113H, THR126H, THR721, THR731, THR761, THR76H, TYR112H, TYR641, TYR801, VAL132H, VAL152H, VAL631
• I-L: ARG103I, LYS166L
• I-6: ARG213I, ASN306, CYS276, GLU126, GLU43I, LYS156, LYS215I, LYS326, LYS42I, PHE136, PRO199I, PRO316, SER286, SER296
• J-Y: ALA115Y, ARG110Y, ARG76J, ASN77J, GLU114Y, GLU133Y, ILE111Y, ILE129Y, LEU80J, LEU87J, LYS134Y, PRO81J, THR82J, THR89J, TRP112Y, TRP113Y
• K-O: ARG60O, MET165K
• L-S: ALA101S, ALA141L, ALA67S, ALA68S, ALA98S, ARG136L, ARG59S, ARG64S, ARG70S, ARG72S, ASN139L, ASN66S, GLN99S, GLU71S, GLY137L, HIS134L, ILE100S, ILE102S, ILE133L, ILE62S, ILE65S, ILE69S, ILE96S, LEU103S, LEU140L, LEU60S, LYS138L, LYS210L, LYS95S, MET149L, PHE57S, PRO105S, PRO145L, SER129L, SER142L, SER146L, THR130L, THR144L, THR63S, TRP61S, TYR143L, VAL147L
• L-6: ARG206, GLN170L, LYS166L
• M-R: ALA101M, ALA103M, ALA111M, ALA188R, ALA83M, ARG104M, ARG107M, ARG160R, ARG161R, ARG182R, ARG185R, ARG223R, ARG64M, ARG71M, ARG78M, ASN158R, ASN202R, ASN73M, ASN82M, ASN9M, ASP72M, ASP80M, ASP81M, CYS66M, GLN108M, GLU119M, GLU154R, GLU157R, GLU193R, GLU205R, GLU68M, GLY100M, GLY167R, GLY191R, GLY74M, ILE102M, ILE168R, ILE183R, ILE186R, ILE187R, ILE194R, ILE203R, ILE76M, ILE77M, LEU106M, LEU121M, LEU153R, LEU162R, LEU198R, LEU226R, LEU229R, LEU69M, LYS109M, LYS112M, LYS159R, LYS166R, LYS204R, LYS67M, LYS70M, MET75M, PHE110M, PHE196R, PHE99M, PRO118M, PRO156R, PRO197R, SER115M, SER200R, THR65M, TYR199R, TYR79M, VAL114M, VAL120M, VAL155R, VAL164R, VAL190R, VAL192R, VAL195R
• N-S: ALA94N, ARG13S, CYS96N, GLY93N, MET1S
• N-T: ARG207T, ASN205T, GLY97N, GLY99N, LYS204T, MET100N, PHE98N, TYR206T
• N-5: ALA1155, ALA133N, ALA975, ALA995, ARG1015, ARG1035, ARG1125, ARG1135, ARG1145, ARG124N, ARG125N, ARG130N, ARG1405, ASP1395, ASP1445, GLN1185, GLN119N, GLN1375, GLU116N, GLY1165, GLY117N, GLY118N, GLY131N, GLY134N, GLY135N, HIS1195, HIS955, ILE1105, ILE132N, ILE1475, LEU1205, LEU122N, LEU126N, LEU129N, LEU1355, LYS1005, LYS1175, LYS128N, LYS1345, LYS965, MET120N, MET136N, PHE1025, PRO121N, PRO127N, SER1335, SER1415, SER985, TYR123N, TYR1435, VAL1045, VAL1115, VAL1385, VAL1465
• O-X: GLY84O, SER66X, SER85O
• P-U: ALA197P, ARG188P, ARG192P, ARG71U, ASN196P, ASP195P, GLU66U, GLY194P, LEU190P, LEU65U, LEU67U, MET68U, PRO191P, PRO69U, TYR70U
• P-2: ALA272, ALA282, ARG122P, ARG185P, ARG188P, ASN422, ASN532, GLN542, GLU203P, GLY412, ILE186P, ILE187P, ILE512, LEU190P, LEU204P, LEU562, LYS127P, LYS302, LYS442, PHE462, PRO191P, SER432, SER452, SER522, THR189P, THR402, THR552, TRP262, TYR201P, VAL205P, VAL482
• Q-X: ARG133X, ARG54Q, ARG56Q, ARG65Q, ARG98X, ASP121X, ASP132X, ASP84Q, GLU60Q, GLU64Q, GLY61Q, GLY99X, ILE136X, ILE55Q, LYS101X, LYS106X, LYS112X, LYS134X, LYS135X, LYS57Q, LYS58Q, LYS86Q, PHE102X, PHE126X, PRO131X, PRO63Q, SER85Q, THR100X, THR62Q, VAL59Q
• S-T: ALA125T, ALA168T, ALA36S, ALA42S, ALA46S, ALA98S, ARG132T, ARG13S, ARG207T, ARG208T, ARG41S, ARG48S, ARG50S, ARG88S, ARG94S, ASN104S, ASN106S, ASN113S, ASN205T, ASN209T, ASN93S, ASP49S, CYS107S, GLN133T, GLN37S, GLN53S, GLN89S, GLN99S, GLU114S, GLY165T, GLY173T, GLY226T, HIS212T, HIS47S, ILE100S, ILE108S, ILE111S, ILE135T, ILE137T, ILE172T, ILE176T, ILE17S, ILE196T, ILE210T, ILE40S, ILE96S, LEU103S, LEU162T, LEU163T, LEU43S, LEU85S, LEU90S, LEU91S, LEU92S, LEU97S, LYS117S, LYS160T, LYS167T, LYS16S, LYS199T, LYS201T, LYS202T, LYS39S, LYS54S, MET110S, PHE124T, PHE198T, PHE20S, PHE81S, PRO175T, SER131T, SER169T, SER45S, THR170T, THR174T, THR225T, TYR109S, TYR112S, TYR134T, TYR143T, TYR171T, TYR200T, TYR206T, VAL126T, VAL127T, VAL128T, VAL136T, VAL161T, VAL164T, VAL177T, VAL195T, VAL197T, VAL44S
• S-2: ALA27S, ARG30S, GLN37S, GLY26S, ILE102, LYS62, THR82, TYR112
• U-2: ALA272, ALA282, ALA59U, ARG47U, ARG48U, ARG54U, ARG56U, ASN422, ASP44U, ASP51U, GLN52U, GLU60U, GLU66U, GLY242, GLY412, ILE192, ILE50U, ILE53U, ILE64U, LEU292, LEU382, LEU62U, LEU65U, LEU67U, LYS132, LYS172, LYS212, LYS222, LYS232, LYS302, LYS442, LYS45U, MET63U, MET68U, PHE322, PRO69U, SER392, SER432, THR402, TRP202, TRP262, TYR252, TYR70U, VAL49U
• V-Z: ALA150V, ALA188V, ALA98Z, ARG93Z, ARG99Z, ASN153V, ASP110V, GLN113V, GLN116V, GLN79Z, GLN95Z, GLU101Z, GLU88Z, GLY192V, GLY87Z, ILE114V, ILE119V, ILE120V, ILE151V, ILE191V, ILE193V, LEU115V, LEU118Z, LEU187V, LEU89Z, LEU92Z, LEU94Z, LYS103Z, LYS86Z, LYS96Z, MET117Z, MET91Z, PHE102Z, PHE136V, PHE154V, PHE155V, PHE194V, PHE90Z, PRO118V, SER117V, SER97Z, THR137V, TYR112V, VAL111V, VAL114Z, VAL138V, VAL82Z, VAL83Z
• X-3: ALA59X, ARG83, HIS60X, LYS53, LYS62X
• X-5: ARG96X, ARG98X, LYS1275, THR1265
• 3-5: ALA1225, ARG1285, ARG323, ASN1255, ASN1305, GLN363, ILE123, ILE343, LEU1205, LYS103, LYS1235, LYS1245, LYS1275, LYS1295, LYS373, SER313, THR1265, THR353, TYR333, VAL113