2ZVM

crystal structure of pcna in complex with dna polymerase iota fragment

• Total interactions analyzed: 15
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 66
  • Norm. En. per Res.: -4.54
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-U	-31.3326	-17.4164	-167.234	-215.983	48	10	9	6290	2	3	7
A-B	-101.5035	-20.1014	-178.035	-299.64	66	12	0	7203	2	23	24
A-C	-101.3987	-21.9089	-179.345	-302.6525	69	14	0	7477	1	24	23
B-V	-24.3733	-19.238	-145.202	-188.8133	46	13	9	5942	2	3	7
B-C	-109.0049	-25.8581	-181.382	-316.245	71	17	0	7634	3	24	23
C-W	-18.5964	-19.3449	-159.481	-197.4223	45	6	10	5911	2	3	5

Interface residues

• A-U: ALA231A, ALA252A, ASP232A, ASP41A, ASP425U, GLN125A, GLN131A, GLN38A, GLU124A, GLU130A, GLY127A, GLY422U, HIS44A, ILE128A, ILE255A, ILE424U, LEU126A, LEU235A, LEU251A, LEU423U, LEU428U, LEU432U, LEU47A, LYS254A, LYS420U, LYS421U, MET40A, MET429U, PHE207A, PHE215A, PRO129A, PRO234A, PRO253A, PRO430U, SER39A, SER42A, SER431U, SER43A, SER46A, TYR211A, TYR249A, TYR250A, TYR426U, TYR427U, VAL233A, VAL236A, VAL45A, VAL48A
• A-B: ALA100A, ALA105A, ALA171B, ALA194B, ALA82A, ARG146B, ARG149B, ASN177B, ASN179B, ASN71A, ASN84A, ASP113A, ASP150B, ASP165B, CYS81A, GLN108A, GLN184B, GLU109A, GLU115A, GLU143B, GLU174B, GLY142B, GLY155B, GLY173B, GLY176B, GLY178B, GLY83A, HIS153B, ILE147B, ILE154B, ILE180B, ILE78A, LEU101A, LEU118A, LEU151B, LEU175B, LEU182B, LEU79A, LEU99A, LYS110A, LYS117A, LYS168B, LYS181B, LYS77A, LYS80A, MET116A, MET75A, PHE103A, PHE144B, PHE169B, PRO140B, SER112A, SER152B, SER170B, SER172B, SER183B, SER74A, SER76A, THR185B, THR73A, THR98A, TYR114A, VAL102A, VAL111A, VAL167B, VAL195B
• A-C: ALA100C, ALA105C, ALA171A, ALA194A, ALA82C, ARG146A, ARG149A, ASN177A, ASN179A, ASN71C, ASP113C, ASP150A, ASP165A, CYS81C, GLN108C, GLN184A, GLU109C, GLU115C, GLU143A, GLU174A, GLY142A, GLY155A, GLY173A, GLY176A, GLY178A, GLY83C, HIS153A, ILE147A, ILE154A, ILE180A, ILE78C, LEU101C, LEU118C, LEU151A, LEU175A, LEU182A, LEU79C, LEU99C, LYS110C, LYS117C, LYS13C, LYS168A, LYS181A, LYS77C, LYS80C, MET116C, MET119C, MET139A, MET75C, PHE103C, PHE144A, PHE169A, PRO140A, SER112C, SER152A, SER170A, SER172A, SER183A, SER186A, SER74C, SER76C, THR185A, THR73C, THR98C, TYR114C, VAL102C, VAL111C, VAL167A, VAL195A
• B-V: ALA231B, ALA252B, ASP232B, ASP41B, ASP425V, GLN125B, GLN131B, GLN38B, GLU124B, GLU130B, GLY127B, GLY422V, HIS44B, ILE128B, ILE255B, ILE424V, LEU126B, LEU235B, LEU251B, LEU423V, LEU428V, LEU47B, LYS254B, LYS420V, LYS421V, MET40B, MET429V, PHE207B, PHE215B, PRO129B, PRO234B, PRO253B, SER230B, SER39B, SER42B, SER43B, SER46B, TYR211B, TYR249B, TYR250B, TYR426V, TYR427V, VAL233B, VAL236B, VAL45B, VAL48B
• B-C: ALA100B, ALA105B, ALA171C, ALA194C, ALA82B, ARG146C, ARG149C, ASN107B, ASN177C, ASN179C, ASN71B, ASN84B, ASP113B, ASP150C, ASP165C, ASP86B, CYS81B, GLN108B, GLN184C, GLU109B, GLU115B, GLU143C, GLU174C, GLU85B, GLY142C, GLY155C, GLY173C, GLY176C, GLY178C, GLY83B, HIS153C, ILE147C, ILE154C, ILE180C, ILE78B, LEU101B, LEU118B, LEU151C, LEU175C, LEU182C, LEU79B, LEU99B, LYS110B, LYS117B, LYS13B, LYS168C, LYS181C, LYS77B, LYS80B, MET116B, MET139C, MET75B, PHE103B, PHE144C, PHE169C, SER112B, SER152C, SER170C, SER172C, SER183C, SER186C, SER74B, SER76B, THR185C, THR73B, THR98B, TYR114B, VAL102B, VAL111B, VAL167C, VAL195C
• C-W: ALA231C, ALA252C, ASP232C, ASP41C, ASP425W, GLN125C, GLN131C, GLN38C, GLU124C, GLU130C, GLU256C, GLY127C, GLY422W, HIS44C, ILE128C, ILE255C, ILE424W, LEU126C, LEU235C, LEU251C, LEU423W, LEU428W, LEU47C, LYS254C, LYS421W, MET40C, MET429W, PHE207C, PHE215C, PRO129C, PRO234C, PRO253C, SER39C, SER42C, SER43C, SER46C, TYR211C, TYR249C, TYR250C, TYR426W, TYR427W, VAL233C, VAL236C, VAL45C, VAL48C