2ZNV

crystal structure of human amsh-lp dub domain in complex with lys63-linked ubiquitin dimer

• Total interactions analyzed: 15
• Total true interactions: 10
• Strongest Interaction:
  • Chains: D-E
  • Int. Res.: 124
  • Norm. En. per Res.: -4.6142
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-107.2856	-69.8187	-366.355	-543.4592	124	16	9	14229	4	33	20
A-C	-11.3836	3.202	-105.144	-113.3257	55	7	0	4291	0	15	20
A-F	0.0	0.0	-0.1175	-0.1175	9	0	0	36	0	3	7
B-C	-8.2866	0.0	10.4675	2.1809	4	8	0	132	0	1	1
C-D	-19.533	17.366	-64.3796	-66.5467	41	2	0	2582	2	20	20
C-E	-13.5099	-40.5487	-96.707	-150.7656	50	2	0	3516	2	26	15
C-F	0.0	-6.8571	-2.4097	-9.2668	10	0	0	139	1	7	8
D-E	-121.9313	-74.0593	-376.165	-572.1556	124	19	9	14216	3	38	24
D-F	-25.3776	18.2768	-108.735	-115.8359	59	5	0	4448	0	17	20
E-F	-18.1689	0.0	57.5694	39.4005	5	10	0	152	0	1	1

Interface residues

• A-B: ALA292A, ALA318A, ALA374A, ALA376A, ALA401A, ALA46B, ARG267A, ARG42B, ARG72B, ARG74B, ASN327A, ASN333A, ASP321A, ASP324A, ASP32B, ASP336A, ASP339A, ASP360A, ASP39B, CYS294A, CYS298A, CYS323A, CYS365A, CYS402A, GLN316A, GLN31B, GLN335A, GLN337A, GLN352A, GLN368A, GLN40B, GLN41B, GLN49B, GLU326A, GLU329A, GLU330A, GLU34B, GLU373A, GLU51B, GLY10B, GLY295A, GLY299A, GLY319A, GLY344A, GLY35B, GLY406A, GLY47B, GLY75B, GLY76B, HIS347A, HIS349A, HIS362A, HIS364A, HIS68B, ILE13B, ILE296A, ILE30B, ILE312A, ILE346A, ILE36B, ILE44B, LEU297A, LEU301A, LEU331A, LEU340A, LEU341A, LEU343A, LEU356A, LEU361A, LEU369A, LEU371A, LEU43B, LEU50B, LEU67B, LEU69B, LEU71B, LEU73B, LEU8B, LYS11B, LYS315A, LYS33B, LYS403A, LYS404A, LYS405A, LYS48B, LYS6B, MET325A, MET370A, MET396A, PHE279A, PHE306A, PHE332A, PHE355A, PHE407A, PHE45B, PRO314A, PRO320A, PRO350A, PRO372A, PRO37B, PRO38B, SER317A, SER357A, SER358A, SER366A, SER400A, THR293A, THR342A, THR348A, THR363A, THR66B, THR7B, THR9B, TRP345A, TYR322A, TYR367A, VAL311A, VAL313A, VAL328A, VAL334A, VAL359A, VAL378A, VAL399A, VAL70B
• A-C: ALA292A, ALA354A, ASN60C, ASP321A, ASP360A, CYS323A, GLN2C, GLN352A, GLN62C, GLU16C, GLU18C, GLU64C, GLY319A, GLY406A, HIS347A, HIS349A, HIS383A, HIS408A, HIS410A, ILE13C, ILE3C, ILE61C, LEU15C, LEU356A, LEU361A, LYS382A, LYS405A, LYS412A, LYS63C, LYS6C, MET1C, PHE355A, PHE407A, PHE45C, PHE4C, PRO19C, PRO320A, PRO350A, PRO409A, SER357A, SER358A, SER380A, SER57C, SER65C, THR12C, THR14C, THR348A, THR351A, THR353A, THR66C, TYR322A, VAL17C, VAL359A, VAL378A, VAL5C
• A-F: ASP321A, ASP32F, GLU34F, GLY35F, GLY406A, LYS11F, LYS33F, LYS405A, TYR322A
• B-C: GLU64C, GLY75B, GLY76B, LYS63C
• C-D: ALA28C, ALA318D, ARG72C, ASN327D, ASP321D, ASP324D, ASP32C, ASP39C, CYS323D, GLN316D, GLN31C, GLN40C, GLU326D, GLU329D, GLU34C, GLY319D, GLY35C, GLY406D, ILE13C, ILE30C, ILE36C, LEU8C, LYS11C, LYS27C, LYS29C, LYS33C, LYS403D, LYS404D, LYS405D, MET325D, PHE407D, PRO320D, PRO37C, PRO38C, SER317D, THR12C, THR14C, THR7C, THR9C, TYR322D, VAL359D
• C-E: ALA28C, ALA46E, ARG42E, ARG54E, ARG72C, ARG72E, ARG74C, ARG74E, ASN25E, ASN60E, ASP32C, ASP39E, ASP52E, ASP58E, ASP77C, GLN31C, GLN40C, GLN40E, GLN49E, GLU24E, GLU34C, GLU51E, GLY10C, GLY35C, GLY53E, GLY75C, GLY76C, ILE23E, ILE30C, ILE36C, ILE61E, LEU50E, LEU56E, LEU71C, LEU73C, LEU8C, LYS11C, LYS27E, LYS33C, LYS48E, PHE45E, PRO37C, PRO38C, SER57E, THR22E, THR55E, THR7C, THR9C, TYR59E, VAL70C
• C-F: ASN25C, ASP32C, GLN2C, GLN2F, GLU16C, GLU16F, LEU15F, LYS29C, LYS33F, THR14F
• D-E: ALA292D, ALA318D, ALA374D, ALA376D, ALA401D, ALA46E, ARG267D, ARG42E, ARG72E, ARG74E, ASN327D, ASN333D, ASP321D, ASP324D, ASP336D, ASP339D, ASP360D, ASP39E, CYS294D, CYS298D, CYS323D, CYS365D, CYS402D, GLN316D, GLN31E, GLN335D, GLN337D, GLN352D, GLN368D, GLN40E, GLN41E, GLN49E, GLU326D, GLU329D, GLU330D, GLU34E, GLY10E, GLY295D, GLY299D, GLY319D, GLY344D, GLY35E, GLY406D, GLY47E, GLY75E, GLY76E, HIS338D, HIS347D, HIS349D, HIS362D, HIS364D, HIS408D, HIS68E, ILE13E, ILE291D, ILE296D, ILE30E, ILE312D, ILE346D, ILE36E, ILE44E, LEU297D, LEU301D, LEU331D, LEU340D, LEU341D, LEU343D, LEU356D, LEU361D, LEU369D, LEU371D, LEU43E, LEU50E, LEU67E, LEU69E, LEU71E, LEU73E, LEU8E, LYS11E, LYS315D, LYS403D, LYS404D, LYS405D, LYS48E, LYS6E, MET325D, MET370D, MET396D, PHE279D, PHE306D, PHE332D, PHE355D, PHE407D, PHE45E, PRO314D, PRO320D, PRO350D, PRO372D, PRO37E, PRO38E, SER317D, SER357D, SER358D, SER366D, SER400D, THR293D, THR342D, THR348D, THR363D, THR66E, THR7E, THR9E, TRP345D, TYR322D, TYR367D, VAL311D, VAL313D, VAL328D, VAL334D, VAL359D, VAL378D, VAL399D, VAL5E, VAL70E
• D-F: ALA292D, ALA354D, ASN60F, ASP321D, ASP360D, CYS323D, GLN2F, GLN352D, GLN62F, GLU16F, GLU18F, GLU64F, GLY290D, GLY406D, HIS347D, HIS349D, HIS362D, HIS383D, HIS408D, HIS410D, HIS68F, ILE13F, ILE291D, ILE3F, ILE61F, LEU15F, LEU356D, LEU361D, LYS382D, LYS404D, LYS412D, LYS63F, LYS6F, MET1F, PHE355D, PHE407D, PHE45F, PHE4F, PRO19F, PRO320D, PRO350D, PRO409D, SER357D, SER358D, SER380D, SER57F, SER65F, THR12F, THR14F, THR348D, THR351D, THR353D, THR66F, TRP345D, TYR322D, VAL17F, VAL359D, VAL378D, VAL5F
• E-F: ARG74E, GLU64F, GLY75E, GLY76E, LYS63F