2ZM6

crystal structure of the thermus thermophilus 30s ribosomal subunit

• Total interactions analyzed: 210
• Total true interactions: 26
• Strongest Interaction:
  • Chains: J-N
  • Int. Res.: 56
  • Norm. En. per Res.: -5.1496
• Hub Node: C(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-C	0.0	0.0	-6.0211	-6.0211	6	6	0	378	0	2	5
B-E	0.0	0.0	-0.1301	-0.1301	7	0	0	45	0	0	2
B-H	-7.5649	-32.0537	-73.9167	-113.5353	36	9	0	2977	1	16	17
C-D	0.0	0.0	-2.2376	-2.2376	3	2	0	147	0	0	5
C-E	0.0	-24.8184	-20.5211	-45.3395	19	0	0	984	2	5	4
C-J	0.0	10.2577	-85.3615	-75.1038	62	5	2	3662	0	14	25
C-N	-8.0192	4.2876	-182.036	-185.7677	76	14	3	8433	0	18	39
D-E	0.0	6.3264	-62.6435	-56.3171	53	0	0	3260	4	9	13
E-H	0.0	37.3921	-124.402	-87.0099	60	21	2	6431	0	35	41
F-O	0.0	0.0	-2.0224	-2.0224	5	0	0	186	0	5	4
F-R	-49.4151	-28.3945	-246.996	-324.8056	83	22	8	10380	3	14	21
G-I	0.0	1.4094	-47.7045	-46.2951	38	16	3	2558	0	6	8
G-K	-5.9035	0.0	-33.5113	-39.4148	23	1	1	1653	0	1	5
G-V	0.0	0.0	-0.0094	-0.0094	2	0	0	9	0	0	0
H-L	0.0	0.0	-10.3834	-10.3834	11	1	0	451	0	0	1
H-Q	0.0	2.4477	-30.5815	-28.1338	14	2	0	1257	0	2	9
I-J	0.0	-0.5146	-29.9986	-30.5132	18	1	0	1397	0	8	18
I-N	0.0	0.0	-16.9564	-16.9564	9	0	0	512	0	0	0
J-N	-29.212	-44.1746	-214.991	-288.3776	56	24	7	8805	5	12	37
K-R	-8.4654	-1.9136	-52.3009	-62.6798	34	6	1	2432	0	14	15
L-Q	-3.0056	0.0	-36.9368	-39.9424	21	0	4	1939	0	0	7
M-S	-10.7603	34.6644	-77.6094	-53.7053	47	7	0	3982	0	8	23
M-V	0.0	0.0	-2.2223	-2.2223	12	0	0	317	0	4	10
N-S	0.0	0.0	-0.0109	-0.0109	6	0	0	11	0	2	2
O-Q	0.0	0.0	-2.0991	-2.0991	12	0	0	254	0	8	5
S-V	0.0	0.0	-0.0039	-0.0039	2	0	0	5	0	0	0

Interface residues

• B-C: ARG130B, ARG179C, GLU134B, GLU206C, PRO131B, VAL207C
• B-E: ARG64E, ASN65E, LEU180B, LYS106B, LYS179B, THR103B, TYR60E
• B-H: ALA177B, ARG175B, ARG178B, ARG30B, ARG53B, ARG68H, ARG69H, ARG75H, ASP193B, ASP195B, ASP198B, ASP73H, GLN70H, GLU176B, GLU22H, GLY71H, ILE182B, ILE200B, LEU180B, LEU196B, LYS179B, LYS21H, LYS27B, PHE181B, PRO183B, PRO194B, PRO72H, PRO74H, PRO76H, TYR199B, TYR20H, TYR65H, VAL174B, VAL184B, VAL197B, VAL19H
• C-D: ALA129C, ARG132C, ARG47D
• C-E: ALA168C, ALA169C, ALA54E, ARG131C, ARG132C, ARG15E, ARG164C, GLN139C, GLN56E, GLU166C, GLU50E, ILE134C, LEU53E, LYS135C, PHE28E, PRO49E, PRO52E, TRP167C, VAL51E
• C-J: ALA24C, ALA60C, ALA61C, ALA65C, ARG21C, ARG43J, ARG45J, ARG51J, ARG59C, ARG66J, ARG9J, ASN3C, ASN63C, ASN69J, ASP12J, ASP17C, ASP89J, GLN28C, GLU58C, GLU61J, GLU64J, GLU95J, GLU97J, GLY10J, GLY13C, GLY25C, GLY2C, GLY93J, GLY9C, HIS13J, HIS68J, HIS6C, ILE14C, ILE57C, ILE5C, ILE96J, LEU12C, LEU16J, LEU33C, LEU65J, LEU8J, LEU90J, LYS14J, LYS26C, LYS4C, PHE10C, PHE11J, PHE47J, PHE63J, PRO91J, SER20C, SER59J, THR15J, THR67J, THR92J, TRP18C, TRP22C, TYR23C, TYR29C, VAL44J, VAL64C, VAL94J
• C-N: ALA24C, ALA48N, ARG11C, ARG16C, ARG21C, ARG26N, ARG30C, ARG35N, ARG38C, ARG40C, ARG45N, ARG54C, ARG57N, ASN3C, ASP17C, ASP36C, CYS24N, CYS27N, CYS43N, GLN28C, GLN37C, GLN52N, GLU19C, GLU35C, GLU44C, GLU46N, GLU8N, GLY13C, GLY185C, GLY25C, GLY2C, GLY38N, GLY51N, GLY55N, GLY9C, HIS31C, HIS49N, HIS6C, ILE14C, ILE57C, ILE5C, ILE8C, LEU12C, LEU178C, LEU32C, LEU33C, LEU34C, LEU39N, LEU44N, LEU47N, LEU53N, LYS11N, LYS26C, LYS27C, LYS4C, LYS50N, LYS58N, PHE10C, PHE186C, PHE36N, PHE37N, PRO54N, PRO7C, SER20C, SER60N, THR22N, TRP18C, TRP22C, TYR184C, TYR23C, TYR29C, TYR34N, VAL25N, VAL33N, VAL55C, VAL56N
• D-E: ALA102E, ALA104E, ALA108E, ALA95E, ARG107E, ARG209D, ARG37E, ARG47D, ARG50D, ARG57D, ASN199D, ASP117E, ASP53D, GLN201D, GLU111E, GLU200D, GLU205D, GLY103E, GLY87D, GLY90D, GLY97E, GLY99E, ILE101E, ILE118E, ILE11E, ILE13E, ILE204D, LEU119E, LEU12E, LEU202D, LEU31E, LYS9E, MET10E, PHE206D, PHE79D, PRO51D, PRO52E, PRO96E, SER208D, SER52D, SER83D, SER91D, THR116E, THR89D, THR98E, TYR207D, TYR54D, VAL100E, VAL105E, VAL115E, VAL56D, VAL88D, VAL92D
• E-H: ALA146E, ALA40H, ALA94E, ALA95E, ARG102H, ARG104H, ARG105H, ARG122H, ARG140E, ARG143E, ARG150E, ARG152E, ARG18H, ARG69H, ASP147E, GLN141E, GLN72E, GLN78H, GLU149E, GLU42H, GLU77H, GLU79E, GLU81E, GLY106H, GLY108H, GLY154E, GLY43H, GLY66H, HIS78E, HIS81H, HIS82H, ILE109H, ILE45H, ILE76E, ILE80E, ILE80H, LEU107H, LEU119E, LEU142E, LEU151E, LEU39H, LEU91E, LYS145E, LYS153E, LYS46H, LYS64H, LYS92E, PHE44H, PRO67H, PRO77E, PRO93E, THR144E, THR75E, TRP138H, TYR65H, VAL103H, VAL137H, VAL148E, VAL79H, VAL82E
• F-O: ARG2F, GLU69F, MET1F, PRO2O, THR4O
• F-R: ALA101F, ALA24R, ALA49F, ALA73R, ALA99F, ARG32R, ARG35R, ARG42R, ARG46F, ARG47F, ARG72R, ARG74R, ARG80F, ARG87F, ASN100F, ASN36R, ASN7F, ASP30R, ASP33R, GLN63R, GLN64F, GLN94F, GLU28R, GLU38R, GLU41F, GLU42F, GLU5F, GLU62R, GLU83R, GLU95F, GLY27R, GLY44F, GLY77R, ILE52F, ILE65R, ILE75R, ILE8F, LEU26R, LEU31R, LEU43F, LEU44R, LEU48F, LEU58R, LEU61F, LEU76R, LEU78R, LEU79R, LEU98F, LYS23R, LYS39F, LYS41R, LYS61R, LYS68R, LYS71R, LYS92F, MET89F, PHE29R, PHE43R, PHE60F, PHE81R, PHE97F, PRO51F, PRO80R, PRO96F, SER59R, SER93F, THR25R, THR69R, THR82R, TRP62F, TYR34R, TYR4F, TYR50F, TYR63F, VAL22R, VAL37R, VAL39R, VAL40F, VAL6F, VAL88F, VAL90F, VAL91F, VAL9F
• G-I: ALA39G, ALA40G, ALA43I, ALA45I, ALA46I, ARG107I, ARG10G, ARG41G, ARG42I, ARG51I, ASN28G, ASN37G, ASP15G, ASP75I, GLN13G, GLN38I, GLU48I, GLY39I, ILE27G, ILE42G, ILE74I, LEU12G, LEU16G, LEU38G, LEU40I, LEU99I, LYS36G, LYS78I, PHE101I, PHE37I, PHE43G, PRO14G, SER71I, THR24G, TYR44G, VAL17G, VAL41I, VAL44I
• G-K: ALA147G, ALA150G, ALA152G, ALA60K, ALA89K, ARG149G, ARG54K, ASN148G, GLN62K, GLN93K, GLU146G, GLY56K, HIS153G, LEU63K, LEU66K, PRO58K, SER53K, THR57K, TYR151G, TYR154G, TYR50K, TYR59K, TYR85G
• G-V: ARG10V, LYS35G
• H-L: ARG91H, ARG92H, ASN8L, GLY90H, ILE7L, LEU10L, LYS88H, PRO89H, THR6L, VAL11L, VAL93H
• H-Q: ARG91H, ARG92H, GLY33Q, GLY90H, HIS29Q, LEU31Q, LYS34Q, LYS88H, PRO28Q, PRO89H, TYR32Q, TYR94H, VAL35Q, VAL93H
• I-J: ARG111I, ARG46J, ARG51J, ARG60J, ASP58J, GLN124I, GLU61J, GLY115I, HIS117I, HIS62J, LYS112I, LYS113I, LYS116I, LYS57J, PRO123I, SER59J, THR48J, TYR114I
• I-N: ALA59N, ARG111I, GLU110I, LYS112I, LYS113I, LYS58N, SER60N, TRP61N, TYR114I
• J-N: ALA48N, ALA59N, ARG29N, ARG35N, ARG41N, ARG45J, ARG45N, ARG46J, ARG51J, ARG57N, ARG60J, ARG66J, ASP12J, CYS40N, CYS43N, GLU46N, GLU61J, GLU64J, GLY10J, GLY52J, GLY55N, GLY93J, HIS13J, HIS49N, HIS56J, HIS62J, HIS68J, ILE42N, ILE50J, LEU39N, LEU44N, LEU47N, LEU53N, LEU65J, LYS14J, LYS55J, LYS57J, LYS58N, PHE11J, PHE36N, PHE37N, PHE47J, PHE54J, PHE63J, PRO53J, PRO54N, SER32N, SER59J, SER60N, THR48J, THR67J, TRP61N, TYR34N, VAL44J, VAL49J, VAL56N
• K-R: ARG18K, ARG74R, ARG85K, ARG87R, ARG91K, ARG96K, ASP110K, ASP111K, GLN99K, GLU83R, GLU92K, GLY48R, HIS116K, ILE108K, ILE83K, ILE95K, LEU85R, LYS106K, LYS49R, LYS84R, LYS88R, PHE81R, PRO113K, SER107K, THR112K, THR47R, THR82R, TYR20K, VAL105K, VAL109K, VAL114K, VAL82K, VAL84K, VAL86R
• L-Q: ARG12L, ARG15L, ARG38Q, ASN8L, GLN9L, GLY14L, GLY33Q, HIS29Q, ILE36Q, ILE7L, LEU10L, LEU31Q, LYS13L, LYS17L, LYS34Q, LYS37Q, PRO30Q, THR6L, TYR32Q, VAL11L, VAL35Q
• M-S: ALA75S, ARG102M, ARG36S, ARG3S, ARG78S, ARG80M, ARG81S, ARG88M, ARG91M, ARG94M, ARG99M, ASN65S, ASN77M, ASP83M, CYS86M, GLN101M, GLU64S, GLU73S, GLY100M, GLY68S, GLY72S, GLY85M, GLY89M, HIS69S, ILE40S, ILE62S, ILE84M, LEU71S, LEU81M, LEU90M, LEU96M, LYS111M, LYS70S, MET66S, MET82M, PHE74S, PRO2S, PRO76S, THR103M, THR63S, THR77S, TYR61S, TYR80S, TYR87M, VAL60S, VAL67S, VAL98M
• M-V: ALA28M, ARG29M, ARG6V, ARG7V, ARG99M, GLU32M, GLY26M, LYS20V, LYS27M, LYS31M, THR8V, TYR21V
• N-S: ARG19N, ARG37S, HIS14S, LYS15N, PHE10S, PHE16N
• O-Q: ARG64O, ARG68O, ARG72O, ARG79O, ARG88O, ASP83Q, GLN71O, GLU86Q, ILE90Q, LEU84Q, LYS87Q, MET82Q
• S-V: ARG6V, PRO2S