2YU9
rna polymerase ii elongation complex in 150 mm mg+2 with utp
Total interactions analyzed 78
Total true interactions 23
Strongest Interaction Chains B-C
Int. Res. 162
Norm. En. per Res. -4.2639
Hub Node B(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -295.7651 -187.1513 -2387.67 -2870.5864 756 218 59 104510 19 255 231
A-C -12.1602 13.1799 -80.1557 -79.1359 55 6 0 3450 0 15 19
A-E -98.7561 -68.9213 -550.777 -718.4544 203 43 15 23407 5 80 60
A-F -63.3107 -5.5617 -425.565 -494.4374 163 19 12 19148 1 57 52
A-H -66.921 -4.4112 -350.05 -421.3822 133 26 10 16481 2 35 34
A-I -90.1419 -45.2859 -394.07 -529.4978 137 22 9 15985 3 53 50
A-K -46.0058 -32.8509 -249.262 -328.1187 89 12 7 9786 2 20 20
B-C -101.9067 -105.542 -483.31 -690.7586 162 27 4 17694 10 56 59
B-E 0.0 0.0 -0.0008 -0.0008 2 0 0 2 0 0 1
B-F 0.0 0.0 -6.5198 -6.5198 13 0 0 360 0 5 6
B-H 0.0 0.0 -0.4945 -0.4945 2 0 0 40 0 0 0
B-I -14.1447 -51.0881 -258.144 -323.3769 134 14 2 12347 2 49 50
B-J -67.7682 -24.9529 -365.965 -458.6861 134 43 7 17769 2 36 35
B-K -19.3554 -4.06 -63.2694 -86.6848 52 9 0 3037 1 13 18
B-L -53.6519 -55.9415 -215.282 -324.8754 108 16 8 10611 5 41 42
C-H 0.0 -2.8728 -21.7456 -24.6184 21 0 1 1116 0 8 6
C-J -52.4912 -62.6784 -240.491 -355.6607 111 28 10 12010 6 40 28
C-K -34.0377 -35.3232 -430.502 -499.863 152 24 15 21035 3 44 43
C-L -52.4774 -43.1833 -144.104 -239.7647 58 6 9 5524 7 25 15
E-F 0.0 -13.8128 -19.7475 -33.5603 22 1 0 1084 0 5 4
H-K 0.0 0.0 -28.606 -28.606 25 2 0 1481 1 5 5
J-L 0.0 0.0 -3.4462 -3.4462 9 0 0 261 0 0 1
K-L 0.0 4.2668 -0.6496 3.6172 6 0 0 133 0 3 2