2YIB

structure of the rna polymerase vp1 from infectious pancreatic necrosis virus

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 173
  • Norm. En. per Res.: -3.2908
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-66.0378	-26.1605	-465.964	-558.1623	178	24	13	19860	3	32	40
A-C	0.0	32.9288	-79.7983	-46.8695	73	7	0	4216	0	28	26
A-D	0.0	0.2367	-9.8454	-9.6087	17	3	0	502	0	10	19
B-C	-58.6125	-25.1374	-459.591	-543.341	169	18	14	19549	3	33	39
B-D	-7.0167	-7.5597	-49.106	-63.6824	63	7	0	3378	0	23	18
C-D	-67.4142	-30.8777	-471.014	-569.3058	173	22	15	20008	3	35	42

Interface residues

• A-B: ALA12A, ALA17A, ALA261B, ALA263B, ALA387B, ALA474B, ALA597B, ALA599B, ALA604B, ALA607B, ARG148A, ARG151A, ARG170B, ARG308B, ARG319B, ARG582B, ARG600B, ARG641B, ASN10A, ASN138A, ASN226B, ASN320B, ASN389B, ASN480B, ASN595B, ASN657B, ASN658B, ASN6A, ASP139A, ASP230B, ASP234B, ASP258B, ASP28A, ASP388B, ASP3A, ASP3A5, ASP402B, ASP559B, ASP648B, ASP655B, ASP665B, CB7.31692-38.97202, CB7.92119-26.68415, CB8.1303923.04620, CB8.9386257.73007, CB9.0870131.62325, GLN609B, GLN9A, GLU137A, GLU145A, GLU262B, GLU27A, GLU307B, GLU407B, GLU579B, GLU594B, GLU605B, GLU643B, GLU661B, GLY143A, GLY229B, GLY257B, GLY306B, GLY406B, GLY472B, GLY562B, GLY592B, GLY603B, GLY646B, GLY651B, GLY663B, GLY664B, GLY87B, HIS240B, HIS329B, ILE125A, ILE14A, ILE225B, ILE243B, ILE31A, ILE321B, ILE4A, ILE606B, ILE610B, ILE647B, LEU128A, LEU131A, LEU135A, LEU136A, LEU147A, LEU15A, LEU18A, LEU224B, LEU231B, LEU238B, LEU264B, LEU30A, LEU330B, LEU560B, LEU561B, LEU578B, LEU593B, LEU598B, LEU626A, LEU642B, LEU666B, LEU77B, LEU80B, LEU89B, LYS11A, LYS129A, LYS235B, LYS244B, LYS256B, LYS305B, LYS591B, LYS596B, LYS601B, LYS638B, LYS645B, LYS88B, LYS90B, MET19A, MET334B, MET659B, MET83B, PHE133A, PHE134A, PHE140A, PHE361B, PHE477B, PHE5A, PHE652B, PHE662B, PRO141A, PRO144A, PRO221B, PRO239B, PRO360B, PRO602B, PRO8A, SER13A, SER222B, SER236B, SER245B, SER333B, SER471B, SER586B, SER660B, SER7A, THR132A, THR16A, THR228B, THR233B, THR242B, THR259B, THR260B, THR337B, THR476B, THR650B, THR73B, TRP563B, TRP656B, TYR159B, TYR227B, TYR237B, TYR326B, TYR386B, TYR391B, TYR608B, VAL241B, VAL265B, VAL29A, VAL619B, VAL644B, VAL649B, VAL84B, VAL93B
• A-C: ALA101C, ALA47C, ALA542A, ARG569A, ARG639A, ASN461C, ASN677A, ASP115C, ASP40C, ASP43C, ASP538A, ASP543A, ASP546A, ASP654A, ASP682A, ASP91C, GLN46C, GLN537A, GLN570A, GLN678A, GLU572A, GLU643A, GLU673A, GLU70C, GLY539A, GLY544A, GLY646A, GLY98C, ILE550A, ILE669A, ILE797C, ILE798C, LEU541A, LEU547A, LEU642A, LEU671A, LEU675A, LEU71C, LYS105C, LYS111C, LYS39C, LYS640A, LYS645A, LYS796C, MET460C, MET571A, MET68C, PHE102C, PHE109C, PRO41C, PRO45C, PRO674A, SER44C, SER545A, SER568A, SER672A, SER94C, THR100C, THR650A, THR670A, THR676A, THR679A, THR67C, THR92C, THR99C, TYR103C, TYR107C, TYR164C, VAL644A, VAL681A, VAL69C, VAL93C, VAL95C
• A-D: ARG551A, ARG81D, ASP139A, ASP74D, ASP86D, ASP91D, GLN82D, GLU145A, GLU72D, GLU85D, GLY87D, LYS88D, MET83D, PRO141A, PRO144A, THR534A, VAL84D
• B-C: ALA12B, ALA17B, ALA261C, ALA263C, ALA387C, ALA474C, ALA597C, ALA599C, ALA604C, ALA607C, ARG148B, ARG151B, ARG170C, ARG308C, ARG319C, ARG582C, ARG600C, ARG641C, ASN10B, ASN138B, ASN226C, ASN389C, ASN480C, ASN595C, ASN657C, ASN658C, ASN6B, ASP139B, ASP230C, ASP234C, ASP258C, ASP28B, ASP388C, ASP3B, ASP559C, ASP648C, ASP655C, ASP665C, ASP86C, GLN609C, GLN9B, GLU137B, GLU145B, GLU262C, GLU27B, GLU307C, GLU407C, GLU579C, GLU594C, GLU605C, GLU643C, GLU661C, GLY143B, GLY229C, GLY257C, GLY306C, GLY472C, GLY562C, GLY592C, GLY603C, GLY646C, GLY651C, GLY663C, GLY664C, GLY87C, HIS240C, HIS329C, ILE125B, ILE14B, ILE225C, ILE243C, ILE31B, ILE321C, ILE4B, ILE606C, ILE647C, LEU128B, LEU131B, LEU135B, LEU136B, LEU147B, LEU15B, LEU18B, LEU224C, LEU231C, LEU238C, LEU264C, LEU30B, LEU330C, LEU560C, LEU561C, LEU578C, LEU593C, LEU598C, LEU626B, LEU642C, LEU666C, LEU77C, LEU80C, LEU89C, LYS11B, LYS129B, LYS235C, LYS244C, LYS256C, LYS305C, LYS591C, LYS596C, LYS601C, LYS638C, LYS645C, LYS88C, LYS90C, MET19B, MET334C, MET659C, MET83C, PHE133B, PHE134B, PHE140B, PHE361C, PHE477C, PHE5B, PHE652C, PHE662C, PRO141B, PRO144B, PRO221C, PRO239C, PRO360C, PRO602C, PRO8B, SER13B, SER222C, SER236C, SER245C, SER333C, SER471C, SER586C, SER660C, SER7B, THR132B, THR16B, THR228C, THR233C, THR242C, THR259C, THR260C, THR337C, THR476C, THR650C, THR73C, TRP563C, TRP656C, TYR159C, TYR227C, TYR237C, TYR326C, TYR386C, TYR391C, TYR608C, VAL241C, VAL265C, VAL29B, VAL619C, VAL644C, VAL649C, VAL84C, VAL93C
• B-D: ALA101D, ALA542B, ARG569B, ARG639B, ARG641B, ASN461D, ASN677B, ASP543B, ASP546B, ASP682B, ASP74D, ASP91D, GLN46D, GLN537B, GLN570B, GLN678B, GLU572B, GLU643B, GLU673B, GLU70D, GLU72D, GLU97D, GLY544B, GLY646B, GLY98D, LEU541B, LEU636B, LEU642B, LEU675B, LEU71D, LYS105D, LYS640B, LYS645B, MET460D, MET571B, MET68D, PHE102D, PRO45D, PRO674B, SER44D, SER545B, SER672B, THR100D, THR670B, THR676B, THR679B, THR67D, THR685B, THR73D, THR92D, THR99D, TYR103D, TYR107D, TYR540B, UNK767D, UNK768D, UNK769D, UNK770D, VAL644B, VAL681B, VAL69D, VAL84D, VAL93D
• C-D: ALA12C, ALA17C, ALA261D, ALA263D, ALA387D, ALA474D, ALA597D, ALA599D, ALA604D, ALA607D, ARG148C, ARG151C, ARG170D, ARG308D, ARG319D, ARG36C, ARG582D, ARG600D, ARG641D, ASN10C, ASN138C, ASN226D, ASN389D, ASN480D, ASN595D, ASN657D, ASN658D, ASN6C, ASP139C, ASP234D, ASP258D, ASP28C, ASP388D, ASP3C, ASP402D, ASP559D, ASP648D, ASP655D, ASP665D, ASP86D, GLN130C, GLN609D, GLN9C, GLU137C, GLU145C, GLU262D, GLU27C, GLU307D, GLU407D, GLU579D, GLU594D, GLU605D, GLU643D, GLU661D, GLY143C, GLY229D, GLY257D, GLY306D, GLY472D, GLY562D, GLY592D, GLY603D, GLY646D, GLY651D, GLY663D, GLY664D, GLY87D, HIS240D, HIS329D, ILE125C, ILE14C, ILE225D, ILE243D, ILE31C, ILE321D, ILE4C, ILE606D, ILE647D, LEU128C, LEU131C, LEU135C, LEU136C, LEU147C, LEU15C, LEU18C, LEU224D, LEU231D, LEU238D, LEU264D, LEU30C, LEU330D, LEU560D, LEU561D, LEU578D, LEU593D, LEU598D, LEU626C, LEU642D, LEU653D, LEU666D, LEU77D, LEU80D, LEU89D, LYS11C, LYS129C, LYS235D, LYS244D, LYS256D, LYS305D, LYS591D, LYS596D, LYS601D, LYS638D, LYS645D, LYS88D, LYS90D, MET19C, MET334D, MET659D, MET83D, PHE133C, PHE134C, PHE140C, PHE361D, PHE477D, PHE5C, PHE652D, PHE662D, PRO141C, PRO144C, PRO221D, PRO239D, PRO360D, PRO576D, PRO602D, PRO8C, SER13C, SER222D, SER236D, SER245D, SER333D, SER471D, SER586D, SER660D, SER7C, THR132C, THR16C, THR228D, THR233D, THR242D, THR259D, THR260D, THR337D, THR476D, THR650D, THR73D, TRP563D, TRP656D, TYR159D, TYR227D, TYR237D, TYR326D, TYR386D, TYR391D, TYR608D, VAL241D, VAL265D, VAL29C, VAL619D, VAL644D, VAL649D, VAL84D, VAL93D