2YI8

structure of the rna polymerase vp1 from infectious pancreatic necrosis virus

• Total interactions analyzed: 10
• Total true interactions: 7
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 105
  • Norm. En. per Res.: -3.9855
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-14.8231	-11.5754	-84.802	-111.2005	55	3	0	3635	1	11	9
A-C	-73.4382	-48.9536	-294.047	-416.4388	105	10	14	12369	4	16	15
A-E	-69.806	-44.9783	-293.919	-408.7033	108	11	14	12474	4	16	15
B-D	-75.6278	-52.8456	-290.002	-418.4755	105	11	14	12262	4	16	15
B-E	-64.458	-51.5948	-300.556	-416.6088	107	8	14	12395	4	16	16
C-E	-18.7563	-1.3118	-79.579	-99.6471	59	5	0	3734	1	11	13
D-E	-28.8102	-13.1503	-85.5306	-127.491	54	3	0	3517	1	10	8

Interface residues

• A-B: ALA101B, ALA542A, ARG373A, ARG569A, ASN461B, ASN677A, ASN684A, ASP538A, ASP543A, ASP546A, ASP682A, GLN46B, GLN537A, GLN570A, GLN678A, GLU533A, GLU572A, GLU70B, GLY253B, GLY544A, GLY98B, ILE252B, ILE65B, LEU541A, LEU547A, LYS105B, LYS254B, MET460B, MET571A, MET573A, MET68B, PHE102B, PHE109B, PRO104B, PRO108B, PRO45B, PRO62B, PRO66B, PRO686A, SER44B, SER545A, SER568A, THR100B, THR676A, THR67B, THR685A, THR99B, TYR103B, TYR106B, TYR107B, TYR164B, TYR567A, VAL532A, VAL681A, VAL69B
• A-C: ALA12C, ALA17C, ALA261A, ALA263A, ALA599A, ALA604A, ALA607A, ARG148C, ARG151C, ARG600A, ARG641A, ASN138C, ASN226A, ASN658A, ASP139C, ASP230A, ASP234A, ASP258A, ASP648A, ASP86A, GLN130C, GLU137C, GLU145C, GLU262A, GLU605A, GLU643A, GLY143C, GLY229A, GLY257A, GLY603A, GLY646A, GLY87A, HIS240A, HIS329A, ILE125C, ILE14C, ILE225A, ILE243A, ILE31C, ILE606A, ILE647A, LEU128C, LEU131C, LEU135C, LEU136C, LEU147C, LEU15C, LEU18C, LEU224A, LEU231A, LEU238A, LEU264A, LEU330A, LEU598A, LEU626C, LEU642A, LEU77A, LEU80A, LEU89A, LYS11C, LYS129C, LYS235A, LYS244A, LYS256A, LYS601A, LYS638A, LYS645A, LYS88A, LYS90A, MET19C, MET334A, MET83A, PHE133C, PHE134C, PHE140C, PHE652A, PRO141C, PRO144C, PRO221A, PRO239A, PRO602A, SER13C, SER222A, SER236A, SER245A, SER333A, THR126C, THR132C, THR16C, THR228A, THR233A, THR242A, THR259A, THR260A, THR337A, THR73A, TYR227A, TYR237A, TYR326A, VAL241A, VAL265A, VAL644A, VAL649A, VAL84A, VAL93A
• A-E: 2258CB4.0823, ALA12A, ALA17A, ALA261E, ALA263E, ALA474E, ALA599E, ALA604E, ALA607E, ARG148A, ARG151A, ARG600E, ARG641E, ASN138A, ASN226E, ASN658E, ASP139A, ASP230E, ASP234E, ASP258E, ASP648E, ASP86E, GLN130A, GLU137A, GLU145A, GLU262E, GLU605E, GLU643E, GLY143A, GLY229E, GLY257E, GLY603E, GLY646E, GLY87E, HIS240E, HIS329E, ILE125A, ILE14A, ILE225E, ILE243E, ILE31A, ILE606E, ILE647E, LEU128A, LEU131A, LEU135A, LEU136A, LEU147A, LEU15A, LEU18A, LEU224E, LEU231E, LEU238E, LEU264E, LEU330E, LEU598E, LEU626A, LEU642E, LEU77E, LEU80E, LEU89E, LYS11A, LYS11A5, LYS129A, LYS235E, LYS244E, LYS256E, LYS601E, LYS638E, LYS645E, LYS88E, LYS90E, MET19A, MET334E, MET83E, PHE133A, PHE134A, PHE140A, PHE652E, PRO141A, PRO144A, PRO221E, PRO239E, PRO602E, SER13A, SER222E, SER236E, SER245E, SER333E, THR126A, THR132A, THR16A, THR228E, THR233E, THR242E, THR259E, THR260E, THR337E, THR73E, TYR227E, TYR237E, TYR326E, VAL241E, VAL265E, VAL644E, VAL649E, VAL84E, VAL93E
• B-D: ALA12B, ALA17B, ALA261D, ALA263D, ALA599D, ALA604D, ALA607D, ARG148B, ARG151B, ARG600D, ARG641D, ASN138B, ASN226D, ASN658D, ASP139B, ASP230D, ASP234D, ASP258D, ASP648D, ASP86D, GLN130B, GLU137B, GLU145B, GLU262D, GLU605D, GLU643D, GLY143B, GLY229D, GLY257D, GLY603D, GLY646D, GLY87D, HIS240D, HIS329D, ILE125B, ILE14B, ILE225D, ILE243D, ILE31B, ILE606D, ILE647D, LEU128B, LEU131B, LEU135B, LEU136B, LEU147B, LEU15B, LEU18B, LEU224D, LEU231D, LEU238D, LEU264D, LEU330D, LEU598D, LEU626B, LEU642D, LEU77D, LEU80D, LEU89D, LYS11B, LYS129B, LYS235D, LYS244D, LYS256D, LYS601D, LYS638D, LYS645D, LYS88D, LYS90D, MET19B, MET334D, MET83D, PHE133B, PHE134B, PHE140B, PHE652D, PRO141B, PRO144B, PRO221D, PRO239D, PRO602D, SER13B, SER222D, SER236D, SER245D, SER333D, THR126B, THR132B, THR16B, THR228D, THR233D, THR242D, THR259D, THR260D, THR337D, THR73D, TYR227D, TYR237D, TYR326D, VAL241D, VAL265D, VAL644D, VAL649D, VAL84D, VAL93D
• B-E: ALA12E, ALA17E, ALA261B, ALA263B, ALA474B, ALA599B, ALA604B, ALA607B, ARG148E, ARG151E, ARG600B, ARG641B, ASN138E, ASN226B, ASN658B, ASP139E, ASP230B, ASP234B, ASP258B, ASP648B, ASP86B, GLN130E, GLU137E, GLU145E, GLU262B, GLU605B, GLU643B, GLY143E, GLY229B, GLY257B, GLY603B, GLY646B, GLY87B, HIS240B, HIS329B, ILE125E, ILE14E, ILE225B, ILE243B, ILE31E, ILE606B, ILE647B, LEU128E, LEU131E, LEU135E, LEU136E, LEU147E, LEU15E, LEU18E, LEU224B, LEU231B, LEU238B, LEU264B, LEU330B, LEU598B, LEU626E, LEU642B, LEU77B, LEU80B, LEU89B, LYS11E, LYS129E, LYS235B, LYS244B, LYS256B, LYS601B, LYS638B, LYS645B, LYS88B, LYS90B, MET19E, MET334B, MET83B, PHE133E, PHE134E, PHE140E, PHE652B, PRO141E, PRO144E, PRO221B, PRO239B, PRO602B, SER13E, SER222B, SER236B, SER245B, SER333B, THR126E, THR132E, THR16E, THR228B, THR233B, THR242B, THR255B, THR259B, THR260B, THR337B, THR73B, TYR227B, TYR237B, TYR326B, VAL241B, VAL265B, VAL644B, VAL649B, VAL84B, VAL93B
• C-E: ALA101E, ALA542C, ARG373C, ARG569C, ASN461E, ASN677C, ASN684C, ASP538C, ASP543C, ASP546C, ASP682C, GLN46E, GLN537C, GLN570C, GLN678C, GLU533C, GLU572C, GLU673C, GLU70E, GLY253E, GLY544C, GLY98E, ILE252E, ILE65E, LEU541C, LEU547C, LYS105E, LYS254E, LYS632C, MET460E, MET571C, MET573C, MET68E, PHE102E, PHE109E, PRO104E, PRO250E, PRO45E, PRO62E, PRO66E, PRO686C, SER44E, SER545C, SER568C, SER94E, THR100E, THR676C, THR67E, THR685C, THR99E, TYR103E, TYR106E, TYR107E, TYR164E, TYR251E, TYR567C, VAL532C, VAL681C, VAL69E
• D-E: ALA101D, ALA542E, ARG373E, ARG569E, ASN461D, ASN677E, ASN684E, ASP538E, ASP543E, ASP546E, ASP682E, GLN46D, GLN537E, GLN570E, GLN678E, GLU533E, GLU572E, GLU70D, GLY253D, GLY544E, GLY98D, ILE252D, ILE65D, LEU541E, LYS105D, LYS254D, MET460D, MET571E, MET573E, MET68D, PHE102D, PHE109D, PRO104D, PRO45D, PRO62D, PRO66D, PRO686E, SER44D, SER545E, SER568E, THR100D, THR676E, THR67D, THR685E, THR99D, TYR103D, TYR106D, TYR107D, TYR164D, TYR567E, VAL529E, VAL532E, VAL681E, VAL69D