2YHQ
structure of respiratory syncytial virus nucleocapsid protein, p1 crystal form
Total interactions analyzed 231
Total true interactions 38
Strongest Interaction Chains P-W
Int. Res. 67
Norm. En. per Res. -3.8934
Hub Node A(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -69.7627 -113.2992 -588.741 -771.8029 228 24 22 25885 10 68 62
A-C 0.0 0.0 -19.6894 -19.6894 13 0 3 1011 0 1 1
A-I 0.0 0.0 -20.643 -20.643 13 0 3 1011 0 1 1
A-Q -87.8905 -111.276 -586.778 -785.9445 229 37 21 26163 10 68 60
B-C -53.6853 -112.2773 -531.708 -697.6706 226 16 21 24490 10 68 58
B-D 0.0 0.0 -23.3528 -23.3528 16 1 3 1137 0 1 1
B-Q 0.0 0.0 -15.7677 -15.7677 12 0 3 895 0 1 1
C-D -79.2425 -111.3677 -576.759 -767.3692 229 39 20 25791 10 67 61
C-E 0.0 0.0 -17.5677 -17.5677 13 0 3 927 0 1 1
D-E -42.8234 -109.2418 -517.368 -669.4332 224 16 20 24127 10 68 58
D-F 0.0 0.0 -22.8042 -22.8042 16 2 3 1117 0 1 1
E-F -85.2476 -113.4858 -548.284 -747.0174 224 29 22 24971 10 67 62
E-G 0.0 0.0 -18.4156 -18.4156 19 3 3 992 0 1 1
F-G -98.6081 -114.9705 -584.209 -797.7876 229 28 22 25907 10 68 59
F-H 0.0 0.0 -22.7197 -22.7197 15 1 3 1050 0 1 1
F-K 0.0 0.0 -0.4147 -0.4147 6 0 0 96 0 4 1
G-H -62.5051 -111.1695 -531.893 -705.5676 228 23 21 24461 10 68 59
G-I 0.0 0.0 -22.6614 -22.6614 16 3 3 1117 0 1 1
H-I -75.9916 -112.9023 -523.204 -712.0979 224 35 20 24495 10 68 61
H-Q 0.0 0.0 -21.1025 -21.1025 14 2 3 1085 0 1 1
H-W 0.0 -2.225 0.0 -2.225 2 0 0 0 0 0 0
I-Q -76.1034 -116.0305 -565.859 -757.993 227 28 22 25322 10 68 60
J-K -93.1445 -112.7079 -581.187 -787.0394 230 36 21 25881 10 69 61
J-L 0.0 0.0 -20.3301 -20.3301 15 3 3 1068 0 1 1
J-Z -57.1013 -110.3804 36 ARG234Z, ARG238Z, ARG259Z, ARG27J, ARG73Z, ASN364Z, ASP10J, ASP175J, ASP221J, ASP31J, ASP369Z, ASP39Z, ASP85J, ASP85Z, GLU148Z, GLU214J, GLU240Z, GLU282J, GLU289Z, GLU297J, GLU373Z, GLY273J, GLY30J, HIS225J, HIS225Z, HIS89J, ILE82J, LYS22J, LYS265Z, LYS268J, LYS42Z, LYS5J, LYS7J, LYS81Z, THR233Z, TYR23J
K-L -68.5885 -110.5499 -528.507 -707.6455 224 20 21 24374 10 68 59
K-M 0.0 0.0 -22.5028 -22.5028 15 1 3 1076 0 1 1
L-M -90.1871 -110.4576 -543.419 -744.0637 228 35 19 25149 10 68 61
L-N 0.0 0.0 -14.4645 -14.4645 12 0 3 841 0 1 1
M-N -84.6259 -113.4644 -591.995 -790.0853 227 20 23 25766 10 67 61
M-O 0.0 0.0 -18.2032 -18.2032 13 0 3 955 0 1 1
N-O -66.5189 -111.0798 -549.367 -726.9657 226 20 21 24870 10 68 58
N-P 0.0 0.0 -22.9787 -22.9787 16 2 3 1038 0 1 1
O-P -73.3208 -107.9826 -501.027 -682.3304 224 35 18 23922 10 65 60
O-W 0.0 0.0 -15.5907 -15.5907 10 0 3 812 0 1 0
P-W -67.531 -113.6363 -79.6875 -260.8548 67 3 9 3980 1 6 7
W-Y -78.4506 -115.6974 41 ALA275Y, ARG234W, ARG238W, ARG259W, ARG27Y, ARG73W, ASN364W, ASP10Y, ASP175Y, ASP221Y, ASP31Y, ASP369W, ASP39W, ASP85W, ASP85Y, GLN16Y, GLN26Y, GLN41W, GLU148W, GLU214Y, GLU240W, GLU282Y, GLU289W, GLU297Y, GLU373W, GLY273Y, GLY296W, GLY30Y, HIS225W, HIS225Y, HIS89Y, ILE82Y, LYS22Y, LYS265W, LYS268Y, LYS42W, LYS5Y, LYS7Y, LYS81W, SER28Y, VAL362W
Y-Z -76.8053 -115.7787 44 ALA275Z, ARG234Y, ARG238Y, ARG259Y, ARG27Z, ARG73Y, ASN306Z, ASN364Y, ASP10Z, ASP175Z, ASP221Z, ASP31Z, ASP369Y, ASP39Y, ASP85Y, ASP85Z, GLN16Z, GLN26Z, GLN41Y, GLU148Y, GLU214Z, GLU240Y, GLU282Z, GLU289Y, GLU297Z, GLU373Y, GLY235Y, GLY273Z, GLY296Y, GLY30Z, HIS225Y, HIS225Z, HIS89Z, ILE82Z, LYS215Z, LYS22Z, LYS265Y, LYS268Z, LYS42Y, LYS5Z, LYS7Z, LYS81Y, SER28Z, VAL362Y