2YBB
fitted model for bovine mitochondrial supercomplex i1iii2iv1 by single particle cryo-em (emd-1876)
Total interactions analyzed 1128
Total true interactions 117
Strongest Interaction Chains G-H
Int. Res. 23
Norm. En. per Res. -8.0466
Hub Node A(17)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
1-2 -147.287 -144.1679 -707.284 -998.7389 228 40 16 28079 13 79 77
1-3 -34.4456 -41.5088 -330.183 -406.1374 147 20 7 15396 5 47 55
1-7 0.0 3.1113 -22.2836 -19.1723 25 0 1 1256 0 3 16
2-3 -7.6605 68.6194 -150.455 -89.4961 58 12 0 5417 2 16 17
2-7 -37.9808 -58.8574 -143.26 -240.0983 83 13 8 7059 4 25 18
3-4 0.0 3.2678 -247.092 -243.8242 87 27 5 10627 1 20 21
3-5 -35.7356 -18.3912 -228.781 -282.9078 99 12 2 8850 4 26 26
3-7 -32.5421 -7.8802 -227.578 -268.0003 92 16 4 9322 8 52 61
3-8 -32.2931 -98.8566 -137.992 -269.1417 59 14 1 5877 6 30 24
4-5 -206.3549 -44.35 -729.115 -979.8199 236 50 15 30645 16 84 83
4-6 -22.5327 -38.5654 -266.585 -327.6831 110 19 5 11104 5 17 25
4-7 -15.0388 -57.1503 -71.7467 -143.9358 29 5 1 2761 3 9 13
4-8 -40.5491 -48.962 -267.059 -356.5701 98 7 5 10594 4 40 21
5-6 -24.7186 -4.8316 -82.2974 -111.8477 50 3 1 3502 0 12 5
5-8 -15.0966 -54.1877 -167.114 -236.3983 57 8 6 6338 7 12 12
6-8 -73.8047 -24.6256 -335.23 -433.6602 117 49 15 14578 3 35 42
7-8 -7.1403 28.5007 -93.8449 -72.4845 63 7 3 4626 0 22 24
A-B -157.8236 -68.7173 -630.71 -857.2509 235 34 12 24391 7 59 55
A-C -10.4192 -14.5424 -49.0437 -74.0053 33 3 0 2048 3 11 14
A-D -2.6955 4.325 -22.3086 -20.6791 33 0 1 1151 0 9 12
A-E -56.5787 -11.0475 -260.202 -327.8282 107 12 4 10220 1 31 30
A-F 0.0 2.7196 -0.1839 2.5357 7 0 0 72 0 9 8
A-G -149.533 -58.3171 -289.033 -496.8832 72 16 2 9575 2 20 11
A-I -41.4902 20.3773 -220.33 -241.4429 89 19 5 8575 0 17 16
A-J -5.299 -10.6535 -31.0101 -46.9625 23 1 0 1119 0 4 5
A-f 0.0 0.7642 4 ARG104f, GLU351A, HIS289A, LYS110f
B-I -120.2026 -30.2565 -476.629 -627.0881 168 32 26 19353 2 17 18
B-b -45.0961 -220.7255 16 ARG169B, ARG169b, ARG421B, ARG421b, ASN429B, ASN429b, ASN61B, ASN61b, ASP437B, ASP437b, GLU243B, GLU243b, GLU438B, GLU438b, HIS240B, HIS240b
B-f -6.2141 -34.3324 10 ARG104f, ARG133B, ARG134B, ARG49f, ARG87B, GLU100f, GLU103f, GLU136B, GLU96f, LYS84B
C-D -42.749 -86.6658 -455.268 -584.6829 156 14 10 17626 12 37 38
C-E -11.8338 0.662 -140.257 -151.4288 52 2 1 4919 2 3 1
C-F -22.5862 23.826 -312.611 -311.3712 112 15 7 13572 1 38 29
C-G -12.9418 -56.9971 -281.469 -351.4079 111 4 7 10582 5 17 12
C-J 0.0 0.0 -0.0065 -0.0065 2 0 0 4 0 0 0
C-K 0.0 0.0 -0.1411 -0.1411 3 0 0 46 0 0 0
C-c 0.0 27.3833 10 ARG177C, ARG177c, ASP58C, ASP58c, HIS54C, HIS54c, HIS68C, HIS68c, LYS172C, LYS172c
C-e -13.8136 5.4243 8 ARG177C, ARG282C, ASP67e, HIS141e, HIS161e, LYS172C, LYS287C, MET62e
D-E 0.0 -16.9204 -143.019 -159.9394 90 8 4 6392 0 18 27
D-F -10.261 -20.4012 -86.8696 -117.5318 38 4 1 3338 1 9 13
D-G -69.3402 -14.6611 -206.522 -290.5233 62 11 4 7676 2 14 17
D-H -61.2053 -3.4302 -330.898 -395.5335 111 12 5 14098 0 19 27
D-J -64.4833 -87.8074 -276.105 -428.3957 83 8 6 9643 7 51 39
D-d -4.8237 1.08 6 ASN97D, ASN97d, GLU76D, GLU99d, GLY78D, GLY78d
E-F 0.0 0.0 -0.1006 -0.1006 3 0 0 26 0 1 0
E-G -30.5987 -66.5552 -161.802 -258.956 45 5 3 5787 3 12 14
E-J -12.4273 -15.1842 -194.319 -221.9305 59 7 15 7107 1 6 7
E-c -25.341 5.4304 9 ARG282c, ASP67E, HIS141E, HIS161E, LYS172c, LYS287c, PRO175E, THR264c, VAL145E
F-G -7.8546 -61.1481 -84.354 -153.3567 49 1 2 3515 3 12 24
F-a 0.0 4.9563 0.0 4.9563 2 0 0 0 0 0 0
F-b -5.0657 -36.8246 11 ARG104F, ARG133b, ARG134b, ARG49F, ARG87b, GLU100F, GLU103F, GLU136b, GLU96F, LYS110F, LYS84b
G-H -35.8817 -107.4911 -41.699 -185.0718 23 6 0 1470 7 21 7
G-J 0.0 0.0 -0.01 -0.01 2 0 0 7 0 0 0
H-J 0.0 0.0 -0.0041 -0.0041 2 0 0 7 0 0 2
K-a -3.7373 0.0 0.0 -3.7373 2 0 0 0 0 0 0
L-M -63.9963 -103.3525 -883.731 -1051.0799 300 50 36 38074 6 38 40
L-N -66.3903 -53.376 -705.264 -825.0303 249 28 20 29221 5 16 20
L-O -43.7904 -19.6607 -290.063 -353.5141 150 9 14 12343 2 19 20
L-P 0.0 -4.2906 -0.0769 -4.3675 13 0 0 32 0 2 2
L-Q -57.6053 -21.2573 -347.539 -426.4016 97 16 10 13861 0 14 5
L-R -22.5024 2.3594 -81.7424 -101.8854 39 3 1 3336 0 11 3
L-S 0.0 0.0 -25.5649 -25.5649 22 0 0 1050 0 3 0
L-T 0.0 0.0 -15.4165 -15.4165 18 0 0 569 0 0 4
L-U 0.0 0.0 -38.4481 -38.4481 35 1 3 2120 0 0 1
L-V 0.0 3.6519 -65.1299 -61.478 45 2 0 2756 0 2 4
L-W -43.622 -28.7241 -452.462 -524.8081 141 13 12 17480 2 18 14
L-X -91.8139 -22.6708 -275.903 -390.3876 93 16 5 11752 3 9 6
M-N 0.0 0.0 -1.3022 -1.3022 8 0 0 117 0 1 2
M-O -23.8097 -3.6447 -215.142 -242.5964 87 12 3 9138 3 20 18
M-P -16.0915 -10.9817 -63.7389 -90.8121 29 5 0 2699 0 10 8
M-Q 0.0 0.0 -0.0025 -0.0025 2 0 0 3 0 0 2
M-S -64.9868 -19.5046 -280.025 -364.5164 83 17 3 11049 1 11 9
M-T -30.3107 -44.9007 -434.114 -509.3254 145 20 18 16745 3 29 39
M-V 0.0 2.5469 -34.852 -32.3051 21 4 0 1553 0 4 3
N-O 0.0 0.0 -0.0051 -0.0051 2 0 0 6 0 0 0
N-Q -23.4654 -22.3397 -251.24 -297.0451 87 7 7 10246 2 27 13
N-R -41.877 -61.1187 -408.344 -511.3398 157 21 8 16774 3 29 19
N-S -8.843 -5.0877 -54.5853 -68.516 30 4 0 2397 0 4 2
N-U -24.7744 -11.9362 -358.5 -395.2106 115 9 7 15876 4 19 21
N-W 0.0 0.0 -1.1228 -1.1228 5 0 0 79 0 0 0
O-P -65.117 -45.9534 -411.615 -522.6855 109 32 12 15718 7 44 43
O-Q -11.9576 0.0 -34.9296 -46.8872 19 1 0 1154 0 6 1
O-T -11.6113 -22.6374 -102.583 -136.8317 44 3 3 3763 2 13 14
O-V -4.058 -13.1903 -424.387 -441.6353 109 13 9 16281 3 23 24
O-W 0.0 0.0 -0.0586 -0.0586 6 0 0 22 0 0 1
O-X 0.0 0.7304 -58.2226 -57.4922 47 4 4 2600 0 5 4
P-Q 0.0 -37.5404 -44.8657 -82.4061 27 5 0 1738 1 10 7
P-T -58.7335 -89.9269 -170.163 -318.8234 53 11 1 6124 6 20 13
Q-R 0.0 0.0 -11.1717 -11.1717 8 2 1 556 0 0 0
Q-U -4.2385 0.0 -28.6974 -32.9359 21 0 0 966 0 2 1
R-S 0.0 -3.2472 -56.8167 -60.0639 18 1 0 1998 1 6 6
T-V 0.0 0.0 -8.6033 -8.6033 8 0 0 305 0 1 2
U-W -10.7461 0.0 -27.6605 -38.4066 13 2 0 924 0 0 0
V-X 0.0 0.0 -0.159 -0.159 4 0 0 42 0 0 0
W-X -24.0466 -6.7435 -165.59 -196.3801 70 13 9 6989 1 4 12
Y-d -8.0926 -38.1116 8 ALA83Y, GLU145d, GLU167d, LYS25Y, LYS27Y, LYS86Y, LYS87Y, TYR165d
a-b -173.5045 -65.3261 37 ALA291b, ALA2a, ALA88a, ARG113b, ARG287b, ARG356a, ARG46b, ARG87b, ASN363a, ASP114b, ASP370a, CYS282a, GLN143b, GLU130a, GLU137a, GLU373b, GLU376b, GLU60a, GLU76a, GLU80a, GLU90b, HIS284b, HIS289a, HIS61a, HIS85a, LEU86a, LYS100a, LYS286b, LYS363b, LYS65a, SER289b, SER291a, SER375b, THR292b, THR372a, TYR4a, VAL92b
a-c -12.9562 -13.1615 10 ARG436a, ASN435a, ASP20c, ASP214c, ASP332a, ASP433a, GLU429a, HIS221c, LYS217c, TYR223c
a-d -2.1924 4.2244 6 ARG238d, ARG438a, ASN435a, ASP433a, HIS243a, LYS226d
a-e -42.7356 -10.8349 20 ARG14e, ARG235a, ASP142a, ASP147a, ASP20e, ASP417a, ASP4e, GLU168a, GLU172a, GLU258a, GLU30e, GLU50a, HIS243a, HIS2e, LYS26e, LYS33e, LYS6e, SER171a, SER21e, VAL18e
a-f 0.0 2.6011 2 ARG244a, LYS63f
a-g -141.4283 -55.5181 23 ARG11g, ARG235a, ARG244a, ARG9g, ASP246a, CYS242a, GLN240a, GLU22g, GLU245a, GLU429a, GLY238a, GLY5g, HIS12g, HIS243a, HIS328a, HIS6g, LEU7g, SER17g, SER19g, THR15g, THR8g, VAL10g, VAL13g
a-i -52.9659 19.4892 14 CYS51i, GLN136a, GLN305a, GLU130a, GLU137a, GLU140a, GLU53i, GLY285a, GLY286a, HIS61a, LEU50i, LEU70i, SER69i, VAL42i
a-j -3.5513 -11.3284 3 ARG15j, ASP417a, SER412a
b-i -127.6234 -40.3213 23 ALA59i, ALA66i, ARG287b, ARG52i, ARG56i, ASN290b, ASN313b, ASP308b, GLN153b, GLN156b, GLN276b, GLN58i, GLU53i, GLY288b, GLY57i, GLY61i, LEU70i, LEU96b, PRO41i, SER100b, VAL309b, VAL68i, VAL98b
c-d -43.2221 -95.772 21 ARG118d, ARG120d, ARG233d, ARG49d, ARG71c, ARG80c, ASP216c, ASP248c, ASP252c, ASP254c, ASP72c, GLU195d, GLU197d, HIS121d, HIS221c, HIS267c, HIS50d, LYS223d, LYS226d, LYS227c, TYR115d
c-e -11.5395 1.3779 4 ALA66e, ASP67e, ASP72c, HIS68c
c-f -20.7351 23.3257 15 ARG17f, ARG313c, ARG33f, ASP214c, ASP216c, ASP34f, ASP67f, ASP86f, GLU39f, HIS308c, HIS38f, LYS311c, LYS375c, LYS378c, LYS63f
c-g -14.3059 -59.9725 7 ARG2g, ASP214c, GLU344c, GLU65g, HIS345c, LYS217c, LYS70g
d-e -8.1258 -3.1719 13 ARG238d, ARG49d, ASP4e, ASP67e, ASP80e, ASP9e, GLU76d, HIS2e, HIS50d, LYS234d, LYS77e, LYS86d, SER72e
d-f -10.0884 -19.0357 5 ARG233d, ARG71f, ASP67f, LYS231d, LYS234d
d-g -78.0054 -7.3669 14 ALA236d, ALA25g, ARG224d, ARG238d, ARG24g, ASP2d, GLN23g, GLU4d, HIS12g, ILE14g, LYS234d, LYS70g, SER232d, TYR16g
d-h -48.2959 -3.6624 15 ARG21h, ARG28d, ASP15h, ASP173d, ASP185d, ASP22d, CYS54h, GLN181d, HIS63h, HIS6d, LYS184d, LYS78h, SER180d, THR132d, THR139d
d-j -64.0349 -93.9692 21 ARG203d, ASN47j, ASP173d, ASP199d, ASP22d, ASP36j, ASP40j, ASP59d, GLU44j, GLU60d, GLU60j, HIS14d, HIS23d, HIS54j, LEU18d, LYS207d, LYS50j, LYS58j, LYS62j, SER13d, SER20d
e-g -35.6016 -70.0113 11 ARG14e, ARG15e, ARG24g, ARG32e, ASP12e, GLN23g, GLU17e, GLU22g, HIS28g, LYS32g, TYR13e
e-j -28.4208 -17.1747 8 ARG15j, ARG8j, GLU30e, GLU32j, LYS33e, LYS52e, SER11j, TYR10j
f-g -10.7197 -64.7005 10 ALA23f, ARG11g, ARG39g, ARG47g, ARG9g, ASP56f, ASP57f, GLN72f, GLU52f, HIS12g
g-h -8.7771 -72.3262 7 ARG36h, ARG71g, ASP60h, GLU56h, GLU57h, LYS70g, LYS72g