2Y9J
three-dimensional model of salmonella's needle complex at subnanometer resolution
Total interactions analyzed 1128
Total true interactions 87
Strongest Interaction Chains L-R
Int. Res. 66
Norm. En. per Res. -1.4192
Hub Node A(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-O -16.8104 -36.3381 -37.415 -90.5635 65 2 0 2061 2 21 24
A-S -17.4173 -37.1394 -37.9415 -92.4982 66 2 0 2109 2 21 24
A-Z 0.0 0.0 -4.9306 -4.9306 15 0 0 227 0 4 3
A-u 0.0 21.8841 4 ARG340A, ASP166u, ASP333A, HIS162u
B-K -17.2491 -37.244 -37.8254 -92.3185 66 2 0 2097 2 21 24
B-N -16.6723 -36.2581 -37.5251 -90.4555 66 2 0 2067 2 21 24
B-b 0.0 21.7575 -3.1406 18.6169 5 0 0 128 0 5 3
B-c 0.0 0.0 -4.8643 -4.8643 15 0 0 226 0 4 3
C-J -17.0907 -37.0556 -37.8911 -92.0374 66 2 0 2096 2 21 24
C-V -16.5805 -36.3027 -37.591 -90.4742 66 2 0 2075 2 21 24
C-g 0.0 0.0 -4.8805 -4.8805 15 0 0 225 0 4 3
C-v 0.0 20.0835 4 ARG340C, ASP166v, ASP333C, HIS162v
D-F -16.9959 -36.3595 -37.417 -90.7723 65 2 0 2065 2 21 24
D-U -17.3138 -37.2682 -38.0932 -92.6752 66 2 0 2118 2 21 24
D-Y 0.0 21.8702 -3.176 18.6943 5 0 0 129 0 5 3
E-H -16.6027 -36.4633 -37.8435 -90.9094 66 2 0 2088 2 21 24
E-M -16.5955 -36.2737 -37.4757 -90.3449 65 2 0 2063 2 21 24
E-a 0.0 21.8543 -3.1701 18.6841 5 0 0 128 0 5 3
F-G -17.0536 -36.7967 -38.0578 -91.9081 66 2 0 2116 2 21 24
F-r 0.0 21.7449 4 ARG340F, ASP166r, ASP333F, HIS162r
G-R -17.0997 -37.179 -38.1217 -92.4004 66 3 0 2096 2 21 24
G-j 0.0 21.9003 4 ARG340G, ASP166j, ASP333G, HIS162j
H-K -17.6156 -37.6736 -38.3562 -93.6454 66 2 0 2148 2 21 24
H-a 0.0 0.0 -4.9485 -4.9485 15 0 0 227 0 4 3
H-o 0.0 21.9625 4 ARG340H, ASP166o, ASP333H, HIS162o
I-N -17.1438 -37.2595 -38.4681 -92.8714 66 2 0 2143 2 21 24
I-T -16.9495 -36.6732 -37.6561 -91.2789 66 2 0 2083 2 21 24
I-d 0.0 0.0 -4.9424 -4.9424 15 0 0 231 0 4 3
I-i 0.0 21.8085 4 ARG340I, ASP166i, ASP333I, HIS162i
J-X -17.3605 -37.3886 -38.3576 -93.1067 66 2 0 2140 2 21 24
J-g 0.0 21.7531 -3.1246 18.6284 5 0 0 129 0 5 3
K-c 0.0 21.65 -3.0839 18.5661 5 0 0 128 0 5 3
L-Q -17.1316 -37.0841 -37.9397 -92.1554 66 2 0 2101 2 21 24
L-R -17.6502 -37.6955 -38.3227 -93.6684 66 2 0 2148 2 21 24
L-h 0.0 0.0 -4.7663 -4.7663 9 0 0 189 0 2 2
L-n 0.0 21.8518 4 ARG340L, ASP166n, ASP333L, HIS162n
M-P -17.0839 -36.9606 -37.9468 -91.9912 66 2 0 2105 2 21 24
M-f 0.0 0.0 -4.9272 -4.9272 15 0 0 232 0 4 3
M-k 0.0 21.7208 4 ARG340M, ASP166k, ASP333M, HIS162k
N-b 0.0 0.0 -4.9117 -4.9117 15 0 0 225 0 4 3
N-d 0.0 21.9669 -3.2321 18.7349 5 0 0 129 0 5 3
O-V -17.1967 -37.1351 -38.3429 -92.6747 66 2 0 2135 2 21 24
O-Z 0.0 21.6304 -3.0795 18.5509 5 0 0 128 0 5 3
P-W -17.2409 -37.3832 -38.5365 -93.1606 66 3 0 2130 2 21 24
P-f 0.0 21.793 -3.1492 18.6438 5 0 0 129 0 5 3
Q-T -16.6018 -36.3068 -37.6036 -90.5122 66 2 0 2073 2 21 24
Q-h 0.0 21.9763 0.0 21.9763 4 0 0 0 0 0 0
R-s 0.0 21.7344 4 ARG340R, ASP166s, ASP333R, HIS162s
S-W -17.5341 -37.3457 -37.9087 -92.7885 66 2 0 2111 2 21 24
S-e 0.0 21.976 -3.215 18.761 5 0 0 128 0 5 3
T-q 0.0 21.9202 4 ARG340T, ASP166q, ASP333T, HIS162q
U-X -17.1069 -36.8435 -37.5365 -91.4869 65 2 0 2075 2 21 24
U-Y 0.0 0.0 -4.9114 -4.9114 15 0 0 226 0 4 3
U-p 0.0 21.6824 4 ARG340U, ASP166p, ASP333U, HIS162p
V-m 0.0 21.9408 4 ARG340V, ASP166m, ASP333V, HIS162m
W-e 0.0 0.0 -4.872 -4.872 15 0 0 225 0 4 3
W-l 0.0 21.9526 4 ARG340W, ASP166l, ASP333W, HIS162l
X-t 0.0 21.8655 4 ARG340X, ASP166t, ASP333X, HIS162t
Y-p -64.5414 51.0606 39 ARG104p, ARG112p, ARG127Y, ARG141p, ARG190Y, ARG190p, ARG80Y, ARG82Y, ARG99Y, ASN33p, ASP133Y, ASP135Y, ASP177p, ASP22Y, ASP50p, ASP92Y, GLN111p, GLN29p, GLU101p, GLU110Y, GLU110p, GLU114p, GLU121p, GLU138Y, GLU189Y, GLU30p, GLU34p, GLU62Y, HIS129Y, HIS147Y, LEU124p, LYS102p, LYS144p, LYS172p, LYS21Y, LYS48p, LYS73Y, PRO90Y, VAL128Y
Y-r -86.5191 50.527 48 ARG104Y, ARG112Y, ARG127-4.8377592.684552, ARG127r, ARG141Y, ARG190Y, ARG190r, ARG80-3.5354173.113183, ARG80r, ARG82-10.1990822.163839, ARG82-15.7093481.747005, ARG82r, ARG99r, ASN173Y, ASN33Y, ASP133r, ASP135r, ASP177Y, ASP22-2.2320642.975319, ASP22-7.9952252.344728, ASP22r, ASP50Y, ASP92r, GLN111Y, GLN29Y, GLU101Y, GLU110-9.4379952.700321, GLU110Y, GLU110r, GLU114Y, GLU121Y, GLU138r, GLU189r, GLU30Y, GLU34Y, GLU62r, HIS129r, HIS147r, LEU124Y, LYS102Y, LYS144Y, LYS172Y, LYS21r, LYS48Y, LYS73r, PRO90-7.6676932.110973, SER184-22.0075892.052361, VAL128-2.8969273.246020
Z-e 0.0 0.0 -0.0026 -0.0026 2 0 0 3 0 1 0
Z-m -86.7691 51.6492 41 ARG104Z, ARG112Z, ARG127m, ARG141Z, ARG190Z, ARG190m, ARG80m, ARG82m, ARG99m, ASN173Z, ASN33Z, ASP133m, ASP135m, ASP177Z, ASP22m, ASP50Z, ASP92m, GLN111Z, GLN29Z, GLU101Z, GLU110Z, GLU110m, GLU114Z, GLU121Z, GLU138m, GLU189m, GLU30Z, GLU34Z, GLU62m, HIS129m, HIS147m, LEU124Z, LYS102Z, LYS144Z, LYS172Z, LYS21m, LYS48Z, LYS73m, PRO90m, SER184m, VAL128m
Z-u -63.3572 47.5817 39 ARG104u, ARG112u, ARG127Z, ARG141u, ARG190Z, ARG190u, ARG80Z, ARG82Z, ARG99Z, ASN33u, ASP133Z, ASP135Z, ASP177u, ASP22Z, ASP50u, ASP92Z, GLN111u, GLN29u, GLU101u, GLU110Z, GLU110u, GLU114u, GLU121u, GLU138Z, GLU189Z, GLU30u, GLU34u, GLU62Z, HIS129Z, HIS147Z, LEU124u, LYS102u, LYS144u, LYS172u, LYS21Z, LYS48u, LYS73Z, PRO90Z, VAL128Z
a-c 0.0 0.0 -0.0025 -0.0025 2 0 0 3 0 1 0
a-f 0.0 0.0 -0.0025 -0.0025 2 0 0 3 0 1 0
a-k -85.8449 49.3308 41 ARG104a, ARG112a, ARG127k, ARG141a, ARG190a, ARG190k, ARG80k, ARG82k, ARG99k, ASN173a, ASN33a, ASP133k, ASP135k, ASP177a, ASP22k, ASP50a, ASP92k, GLN111a, GLN29a, GLU101a, GLU110a, GLU110k, GLU114a, GLU121a, GLU138k, GLU189k, GLU30a, GLU34a, GLU62k, HIS129k, HIS147k, LEU124a, LYS102a, LYS144a, LYS172a, LYS21k, LYS48a, LYS73k, PRO90k, SER184k, VAL128k
a-o -63.2966 47.5064 39 ARG104o, ARG112o, ARG127a, ARG141o, ARG190a, ARG190o, ARG80a, ARG82a, ARG99a, ASN33o, ASP133a, ASP135a, ASP177o, ASP22a, ASP50o, ASP92a, GLN111o, GLN29o, GLU101o, GLU110a, GLU110o, GLU114o, GLU121o, GLU138a, GLU189a, GLU30o, GLU34o, GLU62a, HIS129a, HIS147a, LEU124o, LYS102o, LYS144o, LYS172o, LYS21a, LYS48o, LYS73a, PRO90a, VAL128a
b-c -86.1145 49.0567 2208.49 2171.4322 193 349 10 21559 3 62 60
b-d -65.0472 52.1503 1918.8 1905.9031 193 336 10 21312 3 61 59
c-d 0.0 0.0 -0.0025 -0.0025 2 0 0 3 0 1 0
c-o -87.9087 52.4418 41 ARG104c, ARG112c, ARG127o, ARG141c, ARG190c, ARG190o, ARG80o, ARG82o, ARG99o, ASN173c, ASN33c, ASP133o, ASP135o, ASP177c, ASP22o, ASP50c, ASP92o, GLN111c, GLN29c, GLU101c, GLU110c, GLU110o, GLU114c, GLU121c, GLU138o, GLU189o, GLU30c, GLU34c, GLU62o, HIS129o, HIS147o, LEU124c, LYS102c, LYS144c, LYS172c, LYS21o, LYS48c, LYS73o, PRO90o, SER184o, VAL128o
d-i -65.5478 47.4172 40 ALA91d, ARG104i, ARG112i, ARG127d, ARG141i, ARG190d, ARG190i, ARG80d, ARG82d, ARG99d, ASN33i, ASP133d, ASP135d, ASP177i, ASP22d, ASP50i, ASP92d, GLN111i, GLN29i, GLU101i, GLU110d, GLU110i, GLU114i, GLU121i, GLU138d, GLU189d, GLU30i, GLU34i, GLU62d, HIS129d, HIS147d, LEU124i, LYS102i, LYS144i, LYS172i, LYS21d, LYS48i, LYS73d, PRO90d, VAL128d
e-f 0.0 0.0 -0.0025 -0.0025 2 0 0 3 0 1 0
e-l -65.0779 51.5013 39 ARG104l, ARG112l, ARG127e, ARG141l, ARG190e, ARG190l, ARG80e, ARG82e, ARG99e, ASN33l, ASP133e, ASP135e, ASP177l, ASP22e, ASP50l, ASP92e, GLN111l, GLN29l, GLU101l, GLU110e, GLU110l, GLU114l, GLU121l, GLU138e, GLU189e, GLU30l, GLU34l, GLU62e, HIS129e, HIS147e, LEU124l, LYS102l, LYS144l, LYS172l, LYS21e, LYS48l, LYS73e, PRO90e, VAL128e
e-u -86.6212 48.3573 41 ARG104e, ARG112e, ARG127u, ARG141e, ARG190e, ARG190u, ARG80u, ARG82u, ARG99u, ASN173e, ASN33e, ASP133u, ASP135u, ASP177e, ASP22u, ASP50e, ASP92u, GLN111e, GLN29e, GLU101e, GLU110e, GLU110u, GLU114e, GLU121e, GLU138u, GLU189u, GLU30e, GLU34e, GLU62u, HIS129u, HIS147u, LEU124e, LYS102e, LYS144e, LYS172e, LYS21u, LYS48e, LYS73u, PRO90u, SER184u, VAL128u
f-k -64.6487 50.5866 39 ARG104k, ARG112k, ARG127f, ARG141k, ARG190f, ARG190k, ARG80f, ARG82f, ARG99f, ASN33k, ASP133f, ASP135f, ASP177k, ASP22f, ASP50k, ASP92f, GLN111k, GLN29k, GLU101k, GLU110f, GLU110k, GLU114k, GLU121k, GLU138f, GLU189f, GLU30k, GLU34k, GLU62f, HIS129f, HIS147f, LEU124k, LYS102k, LYS144k, LYS172k, LYS21f, LYS48k, LYS73f, PRO90f, VAL128f
f-l -87.7736 53.0742 41 ARG104f, ARG112f, ARG127l, ARG141f, ARG190f, ARG190l, ARG80l, ARG82l, ARG99l, ASN173f, ASN33f, ASP133l, ASP135l, ASP177f, ASP22l, ASP50f, ASP92l, GLN111f, GLN29f, GLU101f, GLU110f, GLU110l, GLU114f, GLU121f, GLU138l, GLU189l, GLU30f, GLU34f, GLU62l, HIS129l, HIS147l, LEU124f, LYS102f, LYS144f, LYS172f, LYS21l, LYS48f, LYS73l, PRO90l, SER184l, VAL128l
g-t -86.187 47.5433 41 ARG104g, ARG112g, ARG127t, ARG141g, ARG190g, ARG190t, ARG80t, ARG82t, ARG99t, ASN173g, ASN33g, ASP133t, ASP135t, ASP177g, ASP22t, ASP50g, ASP92t, GLN111g, GLN29g, GLU101g, GLU110g, GLU110t, GLU114g, GLU121g, GLU138t, GLU189t, GLU30g, GLU34g, GLU62t, HIS129t, HIS147t, LEU124g, LYS102g, LYS144g, LYS172g, LYS21t, LYS48g, LYS73t, PRO90t, SER184t, VAL128t
g-v -72.0559 68.6396 38 ALA91g, ARG104v, ARG112v, ARG127g, ARG141v, ARG190g, ARG190v, ARG80g, ARG82g, ARG99g, ASP133g, ASP135g, ASP177v, ASP22g, ASP50v, ASP92g, GLN111v, GLN29v, GLU101v, GLU110g, GLU110v, GLU114v, GLU121v, GLU138g, GLU189g, GLU30v, GLU34v, GLU62g, HIS129g, HIS147g, LEU124v, LYS102v, LYS144v, LYS172v, LYS21g, LYS48v, LYS73g, PRO90g
h-n -65.7647 53.606 39 ARG104n, ARG112n, ARG127h, ARG141n, ARG190h, ARG190n, ARG80h, ARG82h, ARG99h, ASN33n, ASP133h, ASP135h, ASP177n, ASP22h, ASP50n, ASP92h, GLN111n, GLN29n, GLU101n, GLU110h, GLU110n, GLU114n, GLU121n, GLU138h, GLU189h, GLU30n, GLU34n, GLU62h, HIS129h, HIS147h, LEU124n, LYS102n, LYS144n, LYS172n, LYS21h, LYS48n, LYS73h, PRO90h, VAL128h
h-q -86.6091 50.5765 41 ARG104h, ARG112h, ARG127q, ARG141h, ARG190h, ARG190q, ARG80q, ARG82q, ARG99q, ASN173h, ASN33h, ASP133q, ASP135q, ASP177h, ASP22q, ASP50h, ASP92q, GLN111h, GLN29h, GLU101h, GLU110h, GLU110q, GLU114h, GLU121h, GLU138q, GLU189q, GLU30h, GLU34h, GLU62q, HIS129q, HIS147q, LEU124h, LYS102h, LYS144h, LYS172h, LYS21q, LYS48h, LYS73q, PRO90q, SER184q, VAL128q
i-q -63.7176 48.3142 39 ARG104q, ARG112q, ARG127i, ARG141q, ARG190i, ARG190q, ARG80i, ARG82i, ARG99i, ASN33q, ASP133i, ASP135i, ASP177q, ASP22i, ASP50q, ASP92i, GLN111q, GLN29q, GLU101q, GLU110i, GLU110q, GLU114q, GLU121q, GLU138i, GLU189i, GLU30q, GLU34q, GLU62i, HIS129i, HIS147i, LEU124q, LYS102q, LYS144q, LYS172q, LYS21i, LYS48q, LYS73i, PRO90i, VAL128i
j-r -64.8042 50.6899 44 ARG104-8.1540362.126071, ARG104r, ARG112-2.8478693.241971, ARG112-5.1127022.641667, ARG112-9.8264932.677923, ARG112r, ARG127j, ARG141r, ARG190j, ARG190r, ARG80j, ARG82j, ARG99j, ASN33-2.1937522.955771, ASP133j, ASP135j, ASP177r, ASP22j, ASP50r, ASP92j, GLN111-14.3501541.778039, GLN29-7.7898942.337868, GLU101r, GLU110-10.8963372.127207, GLU110j, GLU110r, GLU114r, GLU121r, GLU138j, GLU189j, GLU30r, GLU34r, GLU62j, HIS129j, HIS147j, LEU124-3.6329373.084224, LYS102r, LYS144r, LYS172r, LYS21j, LYS48r, LYS73j, PRO90j, VAL128j
j-s -85.3712 49.5088 41 ARG104j, ARG112j, ARG127s, ARG141j, ARG190j, ARG190s, ARG80s, ARG82s, ARG99s, ASN173j, ASN33j, ASP133s, ASP135s, ASP177j, ASP22s, ASP50j, ASP92s, GLN111j, GLN29j, GLU101j, GLU110j, GLU110s, GLU114j, GLU121j, GLU138s, GLU189s, GLU30j, GLU34j, GLU62s, HIS129s, HIS147s, LEU124j, LYS102j, LYS144j, LYS172j, LYS21s, LYS48j, LYS73s, PRO90s, SER184s, VAL128s
m-v -71.6694 30.4292 39 ARG104m, ARG112m, ARG127v, ARG141m, ARG190m, ARG190v, ARG80v, ARG82v, ARG99v, ASN173m, ASP133v, ASP135v, ASP177m, ASP22v, ASP50m, ASP92v, GLN111m, GLN29m, GLU101m, GLU110m, GLU110v, GLU114m, GLU121m, GLU138v, GLU189v, GLU30m, GLU34m, GLU62v, HIS129v, HIS147v, LYS102m, LYS144m, LYS172m, LYS21v, LYS48m, LYS73v, PRO90v, SER184v, VAL128v
n-s -63.4194 47.1247 39 ARG104s, ARG112s, ARG127n, ARG141s, ARG190n, ARG190s, ARG80n, ARG82n, ARG99n, ASN33s, ASP133n, ASP135n, ASP177s, ASP22n, ASP50s, ASP92n, GLN111s, GLN29s, GLU101s, GLU110n, GLU110s, GLU114s, GLU121s, GLU138n, GLU189n, GLU30s, GLU34s, GLU62n, HIS129n, HIS147n, LEU124s, LYS102s, LYS144s, LYS172s, LYS21n, LYS48s, LYS73n, PRO90n, VAL128n
p-t -64.4118 50.2225 39 ARG104t, ARG112t, ARG127p, ARG141t, ARG190p, ARG190t, ARG80p, ARG82p, ARG99p, ASN33t, ASP133p, ASP135p, ASP177t, ASP22p, ASP50t, ASP92p, GLN111t, GLN29t, GLU101t, GLU110p, GLU110t, GLU114t, GLU121t, GLU138p, GLU189p, GLU30t, GLU34t, GLU62p, HIS129p, HIS147p, LEU124t, LYS102t, LYS144t, LYS172t, LYS21p, LYS48t, LYS73p, PRO90p, VAL128p