2Y9D
structure of the spliceosomal u4 snrnp core domain
Total interactions analyzed 276
Total true interactions 32
Strongest Interaction Chains Q-T
Int. Res. 79
Norm. En. per Res. -4.2415
Hub Node L(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -19.6029 -2.2114 -108.699 -130.5133 73 35 2 6653 0 17 18
A-C 0.0 0.0 -0.0559 -0.0559 2 0 0 15 0 0 1
A-D -40.6882 -50.4147 -181.156 -272.2589 97 25 11 10272 9 27 28
B-C -65.5002 30.8237 -339.464 -374.1405 106 64 10 15674 0 38 48
C-F -38.2435 -40.4872 -43.2756 -122.0063 75 36 6 7269 1 8 10
D-E 0.0 0.0 -0.0007 -0.0007 2 0 0 2 0 0 0
D-G -23.4477 14.6657 -125.145 -133.927 68 23 1 7018 0 20 13
E-F -17.0304 -23.6926 -129.547 -170.2699 74 19 4 6778 1 22 18
E-G -46.7021 -19.3519 -118.024 -184.078 80 36 10 9050 0 9 6
F-G 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
H-I -39.8679 1.468 -117.597 -155.9969 82 34 1 6867 0 18 23
H-J 0.0 0.0 -0.013 -0.013 2 0 0 9 0 0 1
H-K -32.8115 -20.9534 -188.908 -242.6729 97 11 10 10402 6 26 30
I-J -54.8562 38.5517 -302.772 -319.0765 112 71 9 15755 3 41 53
I-M 0.0 0.0 -0.0035 -0.0035 5 0 0 6 0 0 2
J-M -60.2944 -41.8712 -103.53 -205.6956 76 75 9 8942 2 11 10
K-N -19.6666 -2.3558 -117.076 -139.0984 71 21 1 6431 0 18 14
L-M -25.1671 -25.8692 -102.645 -153.6813 80 28 6 7900 1 29 20
L-N -31.0244 -18.2037 -114.268 -163.4961 73 29 8 8253 0 8 7
L-S -5.1705 0.0 -26.7572 -31.9277 33 3 2 2085 0 0 5
L-U 0.0 -5.8151 -0.1389 -5.9541 6 0 0 42 0 3 2
N-S 0.0 -26.7567 -24.9605 -51.7171 14 11 0 967 0 3 4
O-P -67.6253 -0.2685 -133.86 -201.7538 74 30 2 7275 0 20 24
O-Q 0.0 0.0 -0.0306 -0.0306 2 0 0 11 0 0 1
O-R -28.659 -0.8366 -178.868 -208.3636 100 34 13 11381 4 29 33
O-U 0.0 0.0 -0.0015 -0.0015 2 0 0 1 0 0 0
P-Q -59.7266 21.9024 -277.47 -315.2942 102 71 9 14093 0 33 47
P-T 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 2
Q-T -73.2396 -61.4291 -200.407 -335.0757 79 68 8 10343 3 10 10
R-U -10.3495 5.5342 -106.691 -111.5063 61 17 1 5866 0 17 14
S-T -30.1728 -41.2263 -179.076 -250.4751 81 17 4 8626 1 27 18
S-U -37.038 -22.3792 -142.671 -202.0883 78 36 10 8520 2 9 8