2Y9C
structure of the spliceosomal u4 snrnp core domain
Total interactions analyzed 276
Total true interactions 35
Strongest Interaction Chains C-F
Int. Res. 76
Norm. En. per Res. -3.6046
Hub Node L(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -40.4146 -1.1213 -111.117 -152.6529 72 26 2 6865 0 18 20
A-C 0.0 0.0 -0.032 -0.032 2 0 0 14 0 0 1
A-D -27.3658 -44.7128 -189.365 -261.4436 93 19 10 9792 8 27 26
B-C -41.7328 58.3424 -281.527 -264.9174 121 84 12 17074 2 45 55
B-F 0.0 0.0 -0.0097 -0.0097 5 0 0 10 0 0 2
C-F -46.8044 -52.4557 -174.692 -273.9521 76 39 7 8098 2 11 10
D-E 0.0 0.0 -0.0005 -0.0005 2 0 0 1 0 0 0
D-G -12.697 -10.2769 -127.319 -150.2929 69 15 1 6383 0 18 14
E-F -8.0503 -22.5818 -126.361 -156.9931 79 16 2 7465 0 27 20
E-G -42.3976 -22.7337 -140.73 -205.8613 88 49 11 10104 2 14 8
F-G 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
H-I -55.1965 6.5654 -148.405 -197.0361 76 21 2 7177 0 16 24
H-K -29.7233 -2.3144 -174.566 -206.6037 91 20 9 9367 3 23 27
H-N 0.0 0.0 -0.0017 -0.0017 2 0 0 1 0 0 0
I-J -49.3831 21.55 -147.871 -175.7041 119 67 8 15121 3 46 53
I-M 0.0 0.0 -0.0011 -0.0011 2 0 0 3 0 0 2
J-M -57.7878 -41.9986 -161.758 -261.5444 80 38 8 9118 1 12 10
K-L 0.0 0.0 -0.0007 -0.0007 2 0 0 2 0 0 0
K-N -17.7654 17.6779 -137.295 -137.3824 68 6 1 6631 0 20 15
L-M -47.504 -24.9289 -150.183 -222.6159 82 33 4 8369 2 29 21
L-N -24.189 -19.5391 -139.661 -183.3891 74 16 9 7707 0 9 7
L-S -4.0249 0.0 -10.1967 -14.2216 24 5 1 1213 0 0 4
L-U 0.0 -8.9362 -0.4828 -9.419 6 0 0 97 0 3 2
N-S 0.0 -18.8916 -3.1021 -21.9937 10 0 0 327 0 2 3
O-P -37.4604 -2.9803 -79.259 -119.6997 81 38 1 7723 0 19 26
O-Q 0.0 0.0 -0.0067 -0.0067 2 0 0 7 0 0 1
O-R -29.517 -28.2211 -158.022 -215.76 88 12 9 8412 4 25 25
P-Q -53.0612 14.7237 -278.755 -317.0926 105 30 6 13271 2 33 44
P-T 0.0 0.0 -0.0005 -0.0005 2 0 0 1 0 0 2
Q-T -28.5888 -66.2655 -142.884 -237.7382 72 30 7 7361 3 8 9
R-S 0.0 0.0 -0.0005 -0.0005 2 0 0 1 0 0 0
R-U 0.0 11.8414 -24.2065 -12.3651 72 16 2 6825 0 22 17
S-T -58.133 -30.6211 -178.617 -267.371 85 34 5 9646 0 28 20
S-U -44.4006 -18.0226 -154.675 -217.0982 80 28 8 8663 0 9 9
T-U 0.0 0.0 -0.0008 -0.0008 2 0 0 2 0 0 1