2Y9B
structure of the spliceosomal u4 snrnp core domain
Total interactions analyzed 276
Total true interactions 45
Strongest Interaction Chains L-U
Int. Res. 7
Norm. En. per Res. -3.8752
Hub Node C(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -16.8471 4.7122 -119.89 -132.0249 73 28 2 6580 0 17 18
A-C 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 1
A-D -77.9784 -69.5261 -168.513 -316.0175 94 32 11 10123 8 23 28
A-G 0.0 0.0 -0.0036 -0.0036 2 0 0 2 0 0 0
B-C -31.8898 17.8434 -269.168 -283.2144 102 57 11 14559 0 33 47
B-F 0.0 0.0 -0.001 -0.001 2 0 0 3 0 0 2
B-T 0.0 -2.846 -11.0961 -13.9421 11 0 0 359 0 10 5
C-F -60.4302 -47.3149 -163.371 -271.1161 81 60 9 8903 3 9 10
C-Q 0.0 0.0 -0.0734 -0.0734 7 0 0 36 0 1 2
C-S 0.0 4.2111 -12.4323 -8.2212 10 1 0 747 0 1 15
C-T 0.0 -1.0015 -37.8546 -38.8561 45 13 1 2868 0 21 12
C-U 0.0 0.0 -0.0287 -0.0287 2 0 0 13 0 0 0
D-G -6.5838 14.4601 -116.831 -108.9547 67 12 2 6644 0 17 15
E-F -12.4552 -14.0571 -101.179 -127.6913 79 28 4 7043 0 26 20
E-G -29.264 -19.2362 -82.7038 -131.2041 78 35 9 8998 1 10 8
E-Q 0.0 0.0 -0.779 -0.779 7 0 0 190 0 2 6
F-G 0.0 0.0 -0.0008 -0.0008 2 0 0 2 0 0 0
F-P 0.0 -6.9457 -9.996 -16.9416 11 1 0 464 0 9 5
F-Q 0.0 -1.2964 -63.4066 -64.703 52 19 2 3674 0 23 16
F-T 0.0 0.0 -1.4088 -1.4088 9 0 0 198 0 2 1
H-I -44.4793 -3.5 -120.444 -168.4233 71 24 2 6625 0 17 22
H-K -8.2123 22.7646 -150.847 -136.2947 94 20 9 9263 1 23 26
H-N 0.0 0.0 -0.0015 -0.0015 2 0 0 1 0 0 0
I-J -42.344 58.7314 -266.838 -250.4506 111 27 7 14044 2 45 59
I-M 0.0 0.0 -0.041 -0.041 4 0 0 27 0 0 2
J-M -66.0561 -44.0463 -80.0835 -190.1858 82 70 11 9445 2 11 10
K-L 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
K-N -27.6375 -14.9085 -122.553 -165.099 73 37 1 7168 3 22 14
L-M -26.0362 -5.5246 -100.698 -132.2589 78 30 4 7463 1 26 17
L-N -18.9695 -19.0775 -134.18 -172.227 76 40 9 9002 0 8 9
L-S 0.0 0.0 -34.4635 -34.4635 37 3 1 2196 0 2 7
L-U -6.9774 -16.2591 -3.8902 -27.1267 7 0 0 249 2 3 5
M-N 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 0 0
M-S 0.0 0.0 -2.3432 -2.3432 6 0 0 283 0 0 0
N-S 0.0 0.0 -12.6656 -12.6656 15 7 0 614 3 2 2
O-P -28.0958 6.9954 -124.746 -145.8464 75 19 2 6527 0 17 20
O-Q 0.0 0.0 -0.0288 -0.0288 2 0 0 11 0 0 1
O-R -30.7866 -42.4719 -175.099 -248.3575 97 12 11 10261 5 27 27
O-U 0.0 0.0 -0.0017 -0.0017 2 0 0 1 0 0 0
P-Q -28.3431 5.1186 -256.164 -279.3886 101 70 6 13814 2 34 45
P-T 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 0 2
Q-T -24.7899 -30.12 -132.383 -187.2929 72 55 8 8935 2 9 8
R-U -22.4822 6.6725 -139.639 -155.4487 65 16 1 6450 1 17 14
S-T -32.0958 -43.024 -175.389 -250.5088 82 29 5 9235 1 28 22
S-U -33.2938 -22.9976 -151.127 -207.4183 76 23 9 8161 2 8 7