2Y9A
structure of the spliceosomal u4 snrnp core domain
Total interactions analyzed 276
Total true interactions 40
Strongest Interaction Chains C-F
Int. Res. 79
Norm. En. per Res. -4.0267
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -77.9636 -6.8759 -115.805 -200.6445 75 29 2 7015 1 18 17
A-C 0.0 0.0 -0.0027 -0.0027 2 0 0 3 0 0 1
A-D -17.6074 -54.3959 -153.354 -225.3573 93 12 12 9024 6 27 24
B-C -9.1393 48.0236 -261.97 -223.0857 107 40 9 13743 1 39 52
B-T -16.5637 -20.6319 -14.4839 -51.6795 14 10 0 785 0 8 6
C-F -71.7236 -73.8669 -172.515 -318.1055 79 66 8 9113 4 11 10
C-Q 0.0 0.0 -1.5404 -1.5404 6 0 0 122 0 0 1
C-S 0.0 2.9635 -10.5552 -7.5917 13 2 0 699 0 0 12
C-T -17.2554 -13.3919 -43.345 -73.9923 37 5 0 2445 1 19 11
D-E 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
D-G -15.8798 25.6191 -118.095 -108.3556 66 7 2 6301 0 18 11
E-F -35.6298 -12.5593 -179.672 -227.8612 81 22 4 9020 2 26 22
E-G -50.7331 -64.0737 -209.063 -323.8698 96 34 7 11150 5 15 15
E-Q 0.0 0.0 -5.1241 -5.1241 4 4 0 195 0 1 4
F-G 0.0 0.0 -0.0053 -0.0053 2 0 0 7 0 0 0
F-P 0.0 -2.0382 19.0297 16.9915 14 8 0 1164 1 13 8
F-Q -3.0044 -1.5327 -53.9142 -58.4513 46 13 2 2771 0 20 14
F-T 0.0 0.0 -0.1671 -0.1671 7 0 0 42 0 2 1
H-I -8.2962 -2.1686 -149.946 -160.4108 80 29 2 7498 0 19 24
H-K -53.1079 -20.2366 -201.541 -274.8855 96 14 12 10104 7 21 29
I-J -57.4465 43.2017 -286.643 -300.8878 115 58 9 15202 1 47 58
I-M 0.0 0.0 -0.0168 -0.0168 5 0 0 18 0 0 2
J-M -77.3604 -47.8171 -165.515 -290.6925 77 54 9 9090 3 12 9
K-L 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
K-N -12.6886 4.9487 -119.707 -127.4469 67 13 2 6611 1 16 14
L-M -19.3183 -6.2116 -149.193 -174.723 79 18 4 7228 1 22 18
L-N -19.367 -19.6461 -145.704 -184.7171 84 26 9 9444 0 11 9
L-S 0.0 8.82 -57.1117 -48.2917 36 1 2 2972 0 0 7
L-U 0.0 -12.1181 -2.1263 -14.2444 8 0 0 251 0 2 3
M-N 0.0 0.0 -0.0009 -0.0009 2 0 0 2 0 0 0
M-S 0.0 0.0 -0.0039 -0.0039 2 0 0 6 0 0 0
N-S -4.2554 -36.4128 -13.8975 -54.5657 14 5 0 585 3 2 3
O-P -42.4352 8.1454 -128.266 -162.5558 72 32 1 6803 0 20 23
O-R -20.0839 -3.4063 -133.859 -157.3492 79 10 9 7631 4 21 22
P-Q -51.8445 39.9502 -302.181 -314.0753 107 77 10 15337 3 36 48
Q-T -19.4578 -33.4855 -142.28 -195.2232 75 41 7 8805 3 10 9
R-S 0.0 0.0 -0.0007 -0.0007 2 0 0 2 0 0 0
R-U -32.1569 23.8541 -132.42 -140.7228 66 18 1 6391 0 20 15
S-T -41.7902 -47.8959 195.279 105.593 72 42 3 7235 2 27 19
S-U -23.0335 -18.5456 -133.845 -175.4241 75 34 10 8455 1 8 8