2Y7H

atomic model of the dna-bound methylase complex from the type i restriction-modification enzyme ecoki (m2s1). based on fitting into em map 1534.

• Total interactions analyzed: 10
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 136
  • Norm. En. per Res.: -2.3137
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-28.1347	-27.578	-213.619	-269.3317	141	95	4	13371	0	44	28
A-C	-66.784	-19.1465	-228.727	-314.6576	136	113	2	12751	2	51	37
B-C	-8.0317	25.17	-101.812	-84.6737	121	24	0	7887	0	28	18

Interface residues

• A-B: ALA140A, ALA142A, ALA150A, ALA3A, ALA404A, ALA415A, ALA417A, ALA430B, ALA449A, ALA452A, ALA453A, ALA458B, ALA486B, ALA487B, ALA489B, ALA496B, ALA523B, ARG132A, ARG325B, ARG339B, ARG381B, ARG390B, ARG405A, ARG419A, ARG451A, ASN133A, ASN143A, ASN145A, ASN146A, ASN156A, ASN287B, ASN313B, ASN353B, ASN407A, ASN408A, ASN435B, ASN437B, ASN4B, ASP267A, ASP312B, ASP379B, ASP431B, ASP464B, ASP470B, ASP483B, GLN289B, GLN411A, GLN495B, GLU317B, GLU421A, GLU428B, GLU433B, GLU434B, GLU488B, GLU492B, GLU499B, GLU529B, GLU8A, GLY141A, GLY270B, GLY318B, GLY319B, GLY349B, GLY491B, GLY4A, GLY525B, GLY526B, ILE12A, ILE135A, ILE144A, ILE337B, ILE413A, ILE465B, LEU130A, LEU138A, LEU154A, LEU315B, LEU409A, LEU414A, LEU463B, LEU468B, LEU485B, LEU493B, LEU497B, LEU6A, LYS134A, LYS148A, LYS171A, LYS351B, LYS416A, LYS436B, LYS448A, LYS459B, LYS462A, LYS469B, LYS471B, LYS528B, LYS5A, LYS87A, MET1A, MET490B, PHE316B, PHE418A, PHE524B, PRO311B, PRO482B, PRO7A, SER128A, SER129A, SER136A, SER137A, SER139A, SER151A, SER241A, SER2A, SER412A, SER432B, SER460B, SER462B, SER466B, SER498B, SER88A, THR322B, THR342B, THR352B, THR382B, THR410A, THR438B, THR457B, TRP454B, TRP467B, TYR131A, VAL310B, VAL314B, VAL350B, VAL406A, VAL429B, VAL494B, VAL527B, VAL89A, VAL90A
• A-C: ALA199A, ALA204A, ALA343A, ALA346A, ALA430C, ALA443C, ALA458C, ALA486C, ALA487C, ALA489C, ALA496C, ALA8C, ARG195A, ARG214A, ARG325C, ARG326C, ARG339C, ARG344A, ARG381C, ARG390C, ARG446C, ARG448C, ARG456C, ARG505C, ASN215A, ASN313C, ASN345A, ASN349A, ASN353C, ASN383C, ASN435C, ASN437C, ASN4C, ASP312C, ASP364A, ASP379C, ASP431C, ASP461C, ASP464C, ASP470C, ASP475C, ASP483C, ASP501C, ASP5C, CYS350A, GLN198A, GLN219A, GLN31A, GLN357A, GLN495C, GLU211A, GLU217A, GLU298A, GLU30A, GLU317C, GLU428C, GLU433C, GLU434C, GLU488C, GLU492C, GLU499C, GLU529C, GLY202A, GLY203A, GLY207A, GLY349C, GLY356A, GLY491C, GLY526C, ILE465C, LEU201A, LEU209A, LEU315C, LEU380C, LEU463C, LEU468C, LEU493C, LEU497C, LYS194A, LYS208A, LYS212A, LYS351C, LYS352A, LYS358A, LYS363A, LYS389C, LYS436C, LYS459C, LYS469C, LYS471C, LYS528C, MET347A, MET348A, MET490C, PHE196A, PHE216A, PHE269C, PHE299A, PHE316C, PHE450C, PRO218A, PRO311C, PRO341A, SER342A, SER355A, SER361A, SER367A, SER432C, SER445C, SER460C, SER462C, SER466C, SER498C, THR210A, THR342C, THR352C, THR353A, THR354A, THR382C, THR427C, THR438C, THR457C, TRP213A, TRP454C, TRP467C, TYR378C, VAL200A, VAL300A, VAL314C, VAL350C, VAL351A, VAL369A, VAL377C, VAL429C, VAL494C, VAL527C
• B-C: ALA272B, ALA272C, ALA273B, ALA273C, ARG18B, ARG18C, ARG223B, ARG223C, ARG72B, ARG72C, ASN16B, ASN16C, ASN248B, ASN248C, ASN26B, ASN26C, ASN276B, ASN276C, ASN29B, ASN29C, ASN92B, ASN92C, ASP19B, ASP19C, ASP253B, ASP253C, GLN102B, GLN102C, GLN25B, GLN25C, GLN65B, GLN65C, GLN69B, GLN69C, GLU216B, GLU216C, GLU30B, GLU30C, GLU66B, GLU66C, GLU80B, GLU80C, GLU99B, GLU99C, GLY20B, GLY20C, GLY21B, GLY21C, GLY220B, GLY220C, GLY247B, GLY247C, GLY251B, GLY251C, GLY274B, GLY274C, GLY64B, GLY64C, GLY79B, GLY79C, HIS77B, HIS77C, HIS91B, HIS91C, ILE97B, ILE97C, LEU217B, LEU217C, LEU246B, LEU246C, LEU68B, LEU68C, LEU75B, LEU75C, LEU78B, LYS101B, LYS101C, LYS143B, LYS143C, LYS73B, LYS73C, MET74B, PHE70B, PHE70C, PHE90B, PHE90C, PRO100B, PRO100C, PRO219B, PRO219C, SER23B, SER23C, SER271B, SER271C, SER94B, SER94C, THR142B, THR142C, THR221B, THR221C, THR275B, THR275C, THR95B, THR95C, THR96B, THR96C, THR98B, THR98C, TYR346B, TYR346C, TYR54B, TYR71B, TYR71C, VAL218B, VAL218C, VAL22B, VAL22C, VAL76B, VAL76C, VAL93B, VAL93C