2Y0S
crystal structure of sulfolobus shibatae rna polymerase in p21 space group
Total interactions analyzed 325
Total true interactions 71
Strongest Interaction Chains T-Y
Int. Res. 6
Norm. En. per Res. -10.5406
Hub Node A(12)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -263.4165 -260.1431 -2110.69 -2634.2496 639 167 45 90736 19 213 194
A-C -109.5048 -146.0192 -1017.17 -1272.694 334 102 47 49477 13 125 134
A-D 0.0 16.0743 -1.3338 14.7404 18 0 0 113 0 9 7
A-E 0.0 5.2624 -9.9864 -4.724 16 0 0 297 0 2 3
A-F 0.0 0.0 -0.0091 -0.0091 2 0 0 7 0 0 0
A-G -52.1911 -43.2714 -332.036 -427.4985 121 25 8 14704 4 35 27
A-H -8.0383 -15.0228 -128.912 -151.9731 58 17 6 6178 0 13 10
A-K -4.0844 -15.1102 -236.436 -255.6306 121 17 7 11571 2 39 35
A-L -26.5178 -29.3001 -185.939 -241.7569 77 5 2 7664 3 25 21
A-Q 0.0 3.6907 -34.7982 -31.1075 35 8 0 2189 0 22 20
A-V 0.0 0.0 -3.9731 -3.9731 12 0 0 401 0 1 1
A-Y 0.0 10.4714 -0.1681 10.3033 8 0 0 35 0 5 4
B-C -15.7639 7.7395 -170.498 -178.5224 119 8 15 9627 0 16 18
B-D -27.5558 -75.2682 -368.745 -471.569 148 27 5 15664 5 42 52
B-E -12.731 6.307 -18.9312 -25.3552 25 7 2 1237 0 9 8
B-F 0.0 0.0 -2.7809 -2.7809 6 0 0 165 0 0 0
B-G 0.0 0.0 -0.0009 -0.0009 2 0 0 2 0 1 2
B-K 0.0 0.0 -7.4273 -7.4273 16 0 0 503 0 1 1
B-L 0.0 3.0215 -45.8487 -42.8272 34 5 0 2058 1 9 9
B-N -27.5097 -44.5403 -416.375 -488.4251 141 28 9 18226 2 25 31
B-P -25.968 -53.1026 -214.779 -293.8495 103 23 6 9894 2 43 24
C-E -20.4916 -39.4629 -111.513 -171.4675 44 12 2 4664 1 7 8
C-H -33.3818 -24.844 -263.694 -321.9198 105 21 9 11985 3 42 31
C-I 0.0 0.0 -0.0772 -0.0772 3 0 0 25 0 1 0
C-K -27.8643 -41.8125 -239.249 -308.9258 83 25 10 10789 1 16 11
C-W 0.0 8.344 -0.2314 8.1126 8 0 0 42 0 5 4
C-Y 0.0 0.7873 -6.6619 -5.8746 19 0 0 600 0 8 9
C-Z 0.0 -8.6099 2 GLU129C, LYS19Z
D-G 0.0 0.0 -0.1764 -0.1764 6 0 0 59 0 3 2
D-L -41.6585 -118.3319 -348.755 -508.7455 119 20 18 16840 12 43 40
D-N 0.0 2.8983 -231.478 -228.5797 102 12 7 10967 1 19 17
D-P -41.6668 -12.0031 -146.342 -200.012 52 13 12 5456 3 17 11
E-F -41.6152 -28.9731 -404.507 -475.0952 142 49 24 18620 2 33 24
E-K -2.3217 -5.7227 -108.48 -116.5243 44 11 2 4116 0 6 1
G-V -5.741 0.0 -14.1398 -19.8808 19 0 0 779 0 10 9
G-W 0.0 0.0 -3.9551 -3.9551 12 0 0 405 0 1 1
H-K 0.0 -7.7474 -63.9268 -71.6743 36 3 0 2796 1 15 11
H-Q -9.9989 -19.5734 -80.622 -110.1942 52 15 2 4573 2 23 22
H-Y 0.0 -7.4032 0.0 -7.4032 2 0 0 0 0 0 0
I-R 0.0 0.0 -7.0119 -7.0119 16 0 0 478 0 0 1
I-T 0.0 -5.4962 -105.585 -111.0812 44 11 2 4062 0 5 1
I-W -4.0811 -15.6376 -242.815 -262.5337 121 20 7 11743 2 39 35
I-Y -29.0818 -41.2715 -21.2768 -91.6301 33 5 2 1634 0 6 5
I-Z 0.0 -8.6964 8 ARG64Z, ASP12I, GLU17I, GLU27Z, GLU34Z, GLU74Z, HIS14I, LYS30Z
J-W 0.0 3.5732 -33.4376 -29.8644 34 8 0 2198 0 21 20
J-Z -10.2003 -17.113 7 ARG38Z, ARG66J, ASP62J, ASP70J, GLU40Z, GLU63J, LYS33Z
M-R 0.0 3.3268 -46.5731 -43.2463 34 3 0 2111 1 9 9
M-S -39.3229 -105.6476 -348.436 -493.4065 119 18 16 16767 12 43 39
M-W -27.6441 -30.6381 -189.468 -247.7502 79 9 2 7766 3 26 22
N-P 0.0 13.1784 -14.4243 -1.2459 15 1 0 1008 0 2 5
O-R -64.9663 -46.1817 -410.967 -522.115 145 34 9 18396 2 25 30
O-S -5.4358 2.9427 -230.772 -233.2651 103 13 7 10970 1 19 16
O-X 0.0 13.384 -15.2197 -1.8357 14 1 0 1032 0 2 5
R-S -18.4862 -75.16 -365.284 -458.9302 150 31 5 15626 5 42 52
R-T -11.6354 6.2444 -20.1606 -25.5517 25 7 2 1175 0 9 7
R-U 0.0 0.0 -2.1382 -2.1382 6 0 0 139 0 0 0
R-V 0.0 0.0 -0.0012 -0.0012 2 0 0 3 0 1 2
R-W -279.4614 -251.549 -2121.54 -2652.5504 638 158 43 91097 19 211 195
R-X -26.2709 -54.8804 -213.214 -294.3653 103 29 6 10158 2 43 23
R-Y 0.0 7.8182 0.0 7.8182 2 0 0 0 0 0 0
S-V 0.0 0.0 -0.1894 -0.1894 6 0 0 62 0 3 2
S-W 0.0 16.0838 -1.3021 14.7817 17 0 0 110 0 9 7
S-X -42.465 -43.3331 -150.212 -236.0101 53 16 12 5531 3 18 11
T-U -37.8641 -22.5136 -385.99 -446.3676 141 49 24 18325 2 33 24
T-W 0.0 5.2735 -9.4807 -4.2072 15 0 0 287 0 2 3
T-Y -22.2415 -41.0024 0.0 -63.2438 6 0 0 0 0 0 0
U-W 0.0 0.0 -0.011 -0.011 2 0 0 8 0 0 0
V-W -68.1365 -41.1123 -331.973 -441.2219 121 24 8 14819 4 35 27
W-Y -100.4673 -142.1737 -125.429 -368.07 113 21 1 7254 0 33 41
W-Z -8.2685 -14.8569 8 ARG67Z, ASP835W, ASP852W, GLN41Z, GLU34Z, GLU40Z, LYS122W, VAL845W
Y-Z -33.0236 -30.3034 20 ARG290Y, ARG322Y, ARG46Z, ARG67Z, ARG79Z, ASP268Y, ASP49Z, GLU281Y, GLU287Y, GLU291Y, GLU30Y, GLU74Z, HIS14Z, HIS20Z, LEU42Z, LYS271Y, LYS68Z, PRO43Z, THR321Y, THR323Y