2XV6

crystal structure of the hiv-1 capsid protein c-terminal domain (146-220) in complex with a camelid vhh.

• Total interactions analyzed: 6
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 75
  • Norm. En. per Res.: -4.2448
• Hub Node: A(1)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-50.3016	-34.3997	-233.66	-318.3613	75	12	8	9328	4	13	10
B-D	-25.4088	-16.7476	-104.306	-146.4624	62	3	3	4795	1	7	9
C-D	-39.1114	-25.509	-218.58	-283.2004	72	13	8	8863	4	14	9

Interface residues

• A-B: ALA0B, ALA174A, ALA177A, ALA35B, ALA44B, ALA49B, ALA50B, ALA94B, ARG154A, ARG38B, ARG45B, ARG52B, ASN183A, ASN193A, ASN32B, ASP152A, ASP54B, ASP60B, ASP61B, CYS92B, GLN176A, GLN179A, GLN192A, GLN1B, GLU175A, GLU180A, GLU187A, GLU46B, GLY52B, GLY96B, ILE150A, ILE153A, ILE48B, ILE51B, ILE69B, LEU151A, LEU172A, LEU189A, LEU190A, LEU47B, LEU4B, LEU78B, LYS182A, LYS199A, LYS43B, LYS64B, LYS93B, MET185A, MET34B, MET55B, PHE168A, PRO147A, SER101B, SER102B, SER146A, SER149A, SER178A, SER31B, SER56B, SER62B, SER95B, THR148A, THR171A, THR188A, THR57B, TRP103B, TRP184A, TRP36B, TYR37B, TYR59B, VAL181A, VAL191A, VAL33B, VAL58B, VAL63B
• B-D: ALA14B, ALA14D, ARG19B, ARG19D, ARG66B, ARG66D, ASN82B, ASN82D, ASP82B, ASP82D, GLN108B, GLN108D, GLN13B, GLN13D, GLN81B, GLN81D, GLU6B, GLY10B, GLY10D, GLY15B, GLY15D, GLY16B, GLY16D, GLY65B, GLY65D, GLY8B, GLY8D, GLY9B, GLY9D, ILE77D, LEU11B, LEU11D, LEU18B, LEU18D, LEU20B, LEU20D, LEU80B, LEU80D, LEU82B, LEU82D, LYS75B, LYS75D, MET82B, MET82D, SER112B, SER112D, SER17B, SER17D, SER21B, SER21D, SER7B, SER7D, THR107B, THR107D, THR110B, THR110D, TYR79B, TYR79D, VAL109B, VAL109D, VAL12B, VAL12D
• C-D: ALA174C, ALA177C, ALA35D, ALA44D, ALA49D, ALA50D, ALA94D, ARG154C, ARG38D, ARG45D, ARG52D, ARG71D, ASN183C, ASN193C, ASN32D, ASP152C, ASP54D, ASP60D, ASP61D, CYS92D, GLN176C, GLN179C, GLN192C, GLN39D, GLU175C, GLU180C, GLU187C, GLU46D, GLY52D, GLY96D, ILE150C, ILE153C, ILE48D, ILE51D, ILE69D, LEU151C, LEU172C, LEU189C, LEU190C, LEU47D, LEU4D, LEU78D, LYS182C, LYS199C, LYS43D, LYS64D, LYS93D, MET185C, MET34D, MET55D, SER101D, SER102D, SER149C, SER178C, SER31D, SER56D, SER62D, SER95D, THR148C, THR171C, THR186C, THR188C, THR57D, TRP103D, TRP184C, TRP36D, TYR37D, TYR59D, VAL181C, VAL33D, VAL58D, VAL63D