2XUY

trna tranlocation on the 70s ribosome: the post- translocational translocation intermediate ti(post)

• Total interactions analyzed: 276
• Total true interactions: 27
• Strongest Interaction:
  • Chains: J-N
  • Int. Res.: 58
  • Norm. En. per Res.: -4.6981
• Hub Node: C(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-C	0.0	0.0	-0.013	-0.013	5	0	0	13	0	1	1
B-E	0.0	0.0	-0.1354	-0.1354	7	0	0	50	0	0	3
B-H	-7.6213	-45.0489	-64.2578	-116.9279	35	5	0	2678	2	16	16
C-D	0.0	0.0	-0.1097	-0.1097	2	0	0	33	0	0	0
C-E	-6.3047	-14.7758	-3.3833	-24.4639	15	1	0	347	1	5	10
C-J	0.0	11.3297	-78.7213	-67.3916	58	2	1	3420	0	18	30
C-N	-9.9289	8.8118	-222.904	-224.0211	80	11	3	9027	0	18	40
D-E	-18.1675	-3.4126	-57.8212	-79.4013	49	2	0	2701	2	7	11
E-H	-13.666	-32.1208	-115.797	-161.5838	62	14	2	5998	2	38	43
F-O	0.0	0.0	-1.598	-1.598	3	0	0	160	0	3	3
F-R	-56.6189	-33.3593	-245.172	-335.1502	82	35	9	10199	1	13	24
G-I	0.0	1.85	-33.9048	-32.0548	37	3	3	1937	0	5	8
G-K	0.0	0.0	-20.3719	-20.3719	27	2	0	1213	0	4	2
G-U	0.0	0.0	-0.0569	-0.0569	2	0	0	15	0	1	0
H-L	0.0	0.0	-10.1977	-10.1977	10	0	0	454	0	0	1
H-Q	-3.9882	2.5924	-22.0903	-23.4861	13	2	0	1194	0	1	8
I-J	0.0	0.0	-25.8846	-25.8846	18	9	0	1286	0	9	16
I-M	-7.5451	6.7786	-9.5498	-10.3163	5	2	0	269	0	0	3
I-N	0.0	0.0	-17.1456	-17.1456	8	0	0	534	0	0	0
J-N	-30.8419	-41.9613	-199.684	-272.4871	58	31	6	8516	5	17	35
K-R	-20.1555	-17.0072	-62.064	-99.2268	33	10	2	3465	3	13	21
L-Q	0.0	0.0	-40.2931	-40.2931	21	4	4	2090	0	0	8
L-Y	-3.4019	-8.7012	-13.7427	-25.8458	32	1	0	954	0	11	11
M-S	-2.5777	39.9291	-71.5957	-34.2443	42	8	2	3846	0	11	21
M-U	0.0	0.0	-3.3695	-3.3695	12	0	0	409	0	5	11
N-S	0.0	0.0	-0.0492	-0.0492	3	0	0	21	0	0	0
O-Q	0.0	-1.0899	-0.0764	-1.1663	9	0	0	49	0	6	5

Interface residues

• B-C: ARG130B, ARG179C, GLU134B, PRO131B, VAL207C
• B-E: ARG64E, LEU180B, LYS106B, LYS179B, PHE181B, THR103B, TYR60E
• B-H: ALA177B, ARG175B, ARG178B, ARG30B, ARG53B, ARG68H, ARG69H, ARG75H, ASP193B, ASP195B, ASP198B, ASP73H, GLN70H, GLU176B, GLU22H, GLY71H, ILE182B, ILE200B, LEU180B, LEU196B, LYS179B, LYS21H, LYS27B, PHE181B, PRO183B, PRO194B, PRO72H, PRO74H, PRO76H, TYR199B, TYR20H, VAL174B, VAL184B, VAL197B, VAL19H
• C-D: ARG132C, ARG47D
• C-E: ARG131C, ARG164C, ARG24E, ARG25E, GLU50E, GLY22E, GLY23E, LEU53E, LYS135C, PHE26E, PHE28E, PRO49E, PRO52E, TRP167C, VAL51E
• C-J: ALA24C, ALA60C, ALA61C, ALA65C, ARG21C, ARG43J, ARG45J, ARG51J, ARG59C, ARG66J, ARG9J, ASN3C, ASN63C, ASN69J, ASP12J, ASP17C, ASP89J, GLU58C, GLU61J, GLU64J, GLU95J, GLU97J, GLY10J, GLY13C, GLY25C, GLY2C, GLY93J, GLY9C, HIS13J, HIS68J, HIS6C, ILE14C, ILE5C, ILE96J, LEU12C, LEU16J, LEU65J, LEU8J, LEU90J, LYS14J, LYS26C, LYS27C, LYS4C, PHE10C, PHE11J, PHE47J, PHE63J, PRO91J, SER20C, THR15C, THR15J, THR67J, THR92J, TRP18C, TRP22C, TYR23C, TYR29C, VAL94J
• C-N: ALA187C, ALA24C, ALA48N, ARG11C, ARG16C, ARG21C, ARG23N, ARG26N, ARG30C, ARG35N, ARG38C, ARG40C, ARG45N, ARG54C, ARG57N, ARG59C, ASN3C, ASP17C, ASP36C, ASP56C, CYS24N, CYS43N, GLN28C, GLN37C, GLN52N, GLU19C, GLU35C, GLU44C, GLU46N, GLU58C, GLY13C, GLY185C, GLY25C, GLY2C, GLY38N, GLY41C, GLY51N, GLY55N, GLY9C, HIS31C, HIS49N, HIS6C, ILE14C, ILE57C, ILE5C, ILE8C, LEU12C, LEU188C, LEU32C, LEU33C, LEU34C, LEU39N, LEU44N, LEU47N, LEU53N, LYS11N, LYS26C, LYS27C, LYS4C, LYS50N, LYS58N, PHE10C, PHE186C, PHE36N, PHE37N, PRO54N, PRO7C, SER20C, SER60N, THR22N, TRP18C, TRP22C, TYR184C, TYR23C, TYR29C, TYR34N, VAL25N, VAL33N, VAL55C, VAL56N
• D-E: ALA102E, ALA104E, ALA108E, ALA95E, ARG107E, ARG209D, ARG37E, ARG50D, ARG57D, ASN199D, ASP117E, ASP53D, GLN201D, GLU111E, GLU200D, GLU205D, GLU8E, GLY103E, GLY74E, GLY87D, GLY90D, GLY97E, GLY99E, ILE101E, ILE118E, ILE11E, ILE13E, ILE204D, LEU119E, LEU12E, LEU202D, LYS9E, MET10E, PHE206D, PHE79D, PRO96E, SER208D, SER91D, THR116E, THR89D, THR98E, TYR207D, TYR54D, VAL100E, VAL105E, VAL115E, VAL32E, VAL56D, VAL88D
• E-H: ALA138E, ALA146E, ALA40H, ALA94E, ALA95E, ARG102H, ARG104H, ARG105H, ARG122H, ARG140E, ARG143E, ARG150E, ARG152E, ARG41H, ARG69H, ASP147E, GLN141E, GLN72E, GLN78H, GLU149E, GLU42H, GLU77H, GLU79E, GLU81E, GLY106H, GLY108H, GLY154E, GLY43H, GLY47H, GLY66H, HIS78E, HIS81H, ILE109H, ILE45H, ILE76E, ILE80E, ILE80H, LEU107H, LEU142E, LEU151E, LEU39H, LEU91E, LYS145E, LYS153E, LYS46H, LYS64H, LYS92E, PHE44H, PRO67H, PRO76H, PRO77E, PRO93E, THR144E, THR75E, TRP138H, TYR65H, VAL103H, VAL137H, VAL148E, VAL79H, VAL82E, VAL90E
• F-O: ARG2F, GLU69F, PRO2O
• F-R: ALA101F, ALA24R, ALA49F, ALA73R, ALA99F, ARG32R, ARG35R, ARG46F, ARG47F, ARG72R, ARG74R, ARG87F, ASN100F, ASN36R, ASN7F, ASP30R, ASP33R, GLN63R, GLN64F, GLN94F, GLU28R, GLU38R, GLU41F, GLU42F, GLU5F, GLU62R, GLU83R, GLU95F, GLY27R, GLY44F, GLY57R, GLY58F, GLY77R, ILE52F, ILE65R, ILE75R, ILE8F, LEU26R, LEU31R, LEU43F, LEU44R, LEU48F, LEU58R, LEU61F, LEU66R, LEU76R, LEU78R, LEU79R, LEU98F, LYS23R, LYS41R, LYS61R, LYS68R, LYS71R, LYS92F, MET89F, PHE29R, PHE43R, PHE60F, PHE81R, PHE97F, PRO51F, PRO80R, PRO96F, SER59R, SER93F, THR25R, THR69R, THR82R, TRP62F, TYR34R, TYR4F, TYR50F, TYR63F, VAL22R, VAL37R, VAL40F, VAL6F, VAL88F, VAL90F, VAL91F, VAL9F
• G-I: ALA39G, ALA40G, ALA43I, ALA45I, ALA46I, ARG107I, ARG10G, ARG10I, ARG41G, ARG42I, ARG51I, ASN37G, ASP15G, ASP75I, GLN13G, GLN38I, GLU48I, GLY19G, GLY39I, ILE27G, ILE42G, ILE74I, LEU16G, LEU38G, LEU40I, LEU99I, LYS36G, LYS70I, LYS78I, PHE101I, PHE43G, PRO14G, SER71I, TYR44G, VAL17G, VAL41I, VAL44I
• G-K: ALA100K, ALA147G, ALA150G, ALA152G, ALA83G, ALA89K, ALA97K, ARG149G, ARG91K, ARG96K, ASN148G, ASN84G, GLN62K, GLN86G, GLN93K, GLU146G, GLU92K, GLY82G, GLY90K, HIS153G, PRO58K, THR57K, TYR151G, TYR154G, TYR59K, TYR85G, VAL80G
• G-U: ARG10U, LYS35G
• H-L: ARG91H, ARG92H, ASN8L, GLY90H, ILE7L, LEU10L, LYS88H, PRO89H, THR6L, VAL11L
• H-Q: ARG91H, ARG92H, GLY33Q, GLY90H, HIS29Q, LEU31Q, LYS34Q, PRO28Q, PRO89H, TYR32Q, TYR94H, VAL35Q, VAL93H
• I-J: ARG111I, ARG46J, ARG51J, ARG60J, ASP58J, GLU61J, GLY115I, HIS62J, ILE50J, LYS112I, LYS113I, LYS116I, LYS57J, PRO123I, SER59J, THR48J, TYR114I, VAL49J
• I-M: ARG125M, ARG128I, LYS127I, PRO124M, SER126I
• I-N: ALA59N, ARG111I, LYS112I, LYS113I, LYS58N, SER60N, TRP61N, TYR114I
• J-N: ALA48N, ALA59N, ARG29N, ARG31N, ARG35N, ARG41N, ARG45J, ARG45N, ARG46J, ARG51J, ARG57N, ARG60J, ARG66J, ASP12J, CYS40N, CYS43N, GLU46N, GLU61J, GLU64J, GLY10J, GLY38N, GLY52J, GLY55N, GLY93J, HIS13J, HIS49N, HIS56J, HIS62J, HIS68J, ILE42N, ILE50J, LEU39N, LEU44N, LEU47N, LEU53N, LEU65J, LYS14J, LYS55J, LYS57J, LYS58N, PHE11J, PHE36N, PHE37N, PHE47J, PHE54J, PHE63J, PRO53J, PRO54N, SER32N, SER59J, SER60N, THR48J, THR67J, TRP61N, TYR34N, VAL44J, VAL49J, VAL56N
• K-R: ARG74R, ARG85K, ARG87R, ARG91K, ARG96K, ASP110K, ASP111K, GLN99K, GLU83R, GLU92K, GLY86K, HIS116K, ILE108K, ILE83K, ILE95K, LEU85R, LYS106K, LYS49R, LYS84R, LYS88R, PHE81R, PRO113K, PRO80R, SER107K, THR112K, THR47R, THR82R, THR87K, VAL109K, VAL114K, VAL82K, VAL84K, VAL86R
• L-Q: ARG12L, ARG15L, ARG38Q, ASN8L, GLN9L, GLY14L, GLY33Q, HIS29Q, ILE36Q, ILE7L, LEU10L, LEU31Q, LYS13L, LYS34Q, LYS37Q, PRO30Q, PRO5L, THR6L, TYR32Q, VAL11L, VAL35Q
• L-Y: ALA429Y, ARG34L, ARG430Y, ARG59L, CYS37L, GLN421Y, GLN426Y, GLN78L, GLU422Y, GLU445Y, GLU79L, GLY447Y, HIS443Y, HIS80L, LEU424Y, LEU428Y, LEU52L, LYS418Y, LYS544Y, PRO415Y, PRO444Y, SER425Y, SER441Y, SER81L, THR38L, THR442Y, THR446Y, THR449Y, THR44L, THR61L, VAL36L, VAL82L
• M-S: ALA75S, ARG36S, ARG78S, ARG80M, ARG81S, ARG88M, ARG91M, ARG93M, ARG94M, ASN65S, ASP83M, CYS86M, GLN101M, GLU64S, GLU73S, GLY100M, GLY68S, GLY72S, GLY85M, GLY89M, HIS69S, ILE40S, ILE62S, ILE84M, LEU71S, LEU81M, LEU90M, LEU96M, LYS70S, LYS79M, MET66S, PHE74S, PRO76S, THR103M, THR63S, THR77S, THR79S, TYR61S, TYR80S, TYR87M, VAL60S, VAL67S
• M-U: ALA28M, ARG29M, ARG6U, ARG7U, ARG99M, GLU32M, GLY26M, LYS20U, LYS27M, LYS31M, THR8U, TYR21U
• N-S: ARG19N, ARG37S, PHE16N
• O-Q: ARG68O, ARG72O, ARG88O, ASP83Q, GLN71O, GLN93Q, GLU86Q, ILE90Q, LYS87Q