2VTB

structure of cryptochrome 3 - dna complex

• Total interactions analyzed: 66
• Total true interactions: 6
• Strongest Interaction:
  • Chains: C-E
  • Int. Res.: 93
  • Norm. En. per Res.: -2.1174
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-39.4711	20.7758	-179.131	-197.8264	106	8	2	7045	0	41	67
A-E	-16.4012	-33.8273	-125.977	-176.2054	94	5	2	6295	9	51	59
C-D	-31.5214	7.4185	-181.966	-206.0689	108	7	2	7200	1	49	70
C-E	-30.0489	-36.7561	-130.111	-196.916	93	12	2	6569	7	50	54
D-E	0.0	0.0	-0.0088	-0.0088	2	0	0	5	0	0	0
E-F	-22.9553	5.6798	-181.643	-198.9185	106	9	2	7123	2	44	69

Interface residues

• A-B: ARG154A, ARG154B, ARG162A, ARG162B, ARG208A, ARG208B, ARG350A, ARG350B, ASN157A, ASN157B, ASN341A, ASN341B, ASN351A, ASN351B, ASN353B, ASN440A, ASP151A, ASP151B, ASP181A, ASP181B, ASP182A, ASP182B, ASP186A, ASP186B, ASP189A, ASP189B, ASP192A, ASP192B, ASP440B, CYS146A, CYS146B, CYS205A, CYS205B, CYS339A, CYS339B, GLN158A, GLN158B, GLN353A, GLU148A, GLU148B, GLU149A, GLU149B, GLU153A, GLU153B, GLU170B, GLY340A, GLY340B, GLY348A, GLY348B, HIS179A, HIS179B, HIS345A, HIS345B, HIS83A, HIS83B, ILE172B, ILE337A, ILE337B, LEU155A, LEU155B, LEU183A, LEU183B, LEU190A, LEU190B, LEU335A, LEU335B, LYS143A, LYS143B, LYS161A, LYS161B, LYS168A, LYS180A, LYS180B, LYS204A, LYS204B, LYS338A, LYS338B, LYS60B, PHE185A, PHE185B, PHE188A, PHE188B, PHE334A, PHE334B, PHE344A, PHE344B, PRO184A, PRO184B, PRO349A, PRO349B, SER147A, SER147B, SER336A, SER336B, SER342A, SER342B, THR145A, THR145B, VAL150A, VAL150B, VAL152A, VAL152B, VAL187A, VAL187B, VAL352A, VAL352B
• A-E: ALA203E, ALA254A, ALA27E, ALA315E, ARG106A, ARG212E, ARG244A, ARG247A, ARG25E, ARG308E, ARG313E, ARG472A, ARG473A, ARG479A, ARG6A, ASN1A, ASN316E, ASP104A, ASP228A, ASP267E, ASP2A, CYS101A, CYS205E, GLN240A, GLN307E, GLN469A, GLN470A, GLU100A, GLU12A, GLU13A, GLU202E, GLU233A, GLU238A, GLU241A, GLU24E, GLU304E, GLU305E, GLU310E, GLU312E, GLY227A, GLY245A, GLY250A, GLY96A, HIS3A, HIS5A, ILE15A, ILE207E, ILE4A, LEU102A, LEU10A, LEU215E, LEU232A, LEU28E, LYS107A, LYS21E, LYS234A, LYS265E, LYS270E, LYS311E, MET110A, MET99A, PHE248A, PHE260E, PHE466A, PHE97A, PRO230A, PRO239A, PRO29E, PRO8A, SER17E, SER206E, SER209E, SER210E, SER253A, SER30E, SER31E, SER32E, SER33E, THR11A, THR211E, THR22E, THR231A, THR243A, TRP264E, TYR178E, TYR26E, TYR303E, TYR309E, VAL103A, VAL229A, VAL242A, VAL249A, VAL314E, VAL34E
• C-D: ARG154C, ARG154D, ARG162C, ARG162D, ARG208C, ARG208D, ARG350C, ARG350D, ASN157C, ASN157D, ASN165D, ASN341C, ASN341D, ASN351C, ASN351D, ASN440D, ASP151C, ASP151D, ASP181C, ASP181D, ASP182C, ASP182D, ASP186C, ASP186D, ASP189C, ASP189D, ASP192C, ASP192D, CYS146C, CYS146D, CYS205C, CYS205D, CYS339C, CYS339D, GLN158C, GLN158D, GLN353C, GLU148C, GLU148D, GLU149C, GLU149D, GLU153C, GLU153D, GLU170D, GLY340C, GLY340D, HIS179C, HIS179D, HIS345C, HIS345D, HIS83C, HIS83D, ILE172D, ILE337C, ILE337D, LEU155C, LEU155D, LEU183C, LEU183D, LEU190C, LEU190D, LEU335C, LEU335D, LYS143C, LYS143D, LYS161C, LYS161D, LYS168C, LYS168D, LYS180C, LYS180D, LYS204C, LYS204D, LYS338C, LYS338D, LYS60C, LYS60D, PHE185C, PHE185D, PHE188C, PHE188D, PHE334C, PHE334D, PHE344C, PHE344D, PRO184C, PRO184D, PRO349C, PRO349D, PRO442D, SER147C, SER147D, SER206D, SER336C, SER336D, SER342C, SER342D, THR145C, THR145D, TRP173D, VAL150C, VAL150D, VAL152C, VAL152D, VAL187C, VAL187D, VAL352C, VAL352D
• C-E: ALA203C, ALA254E, ALA27C, ALA315C, ALA465E, ARG106E, ARG212C, ARG244E, ARG247E, ARG25C, ARG308C, ARG313C, ARG472E, ARG6E, ASN316C, ASP104E, ASP228E, ASP267C, ASP2E, CYS101E, GLN240E, GLN307C, GLN469E, GLN470E, GLU100E, GLU12E, GLU13E, GLU202C, GLU233E, GLU238E, GLU241E, GLU24C, GLU304C, GLU305C, GLU310C, GLU312C, GLY227E, GLY245E, GLY250E, GLY251E, GLY96E, HIS3E, ILE118E, ILE15E, ILE4E, LEU102E, LEU215C, LEU232E, LEU28C, LEU98E, LYS107E, LYS21C, LYS234E, LYS265C, LYS270C, LYS311C, MET110E, MET99E, PHE23C, PHE248E, PHE260C, PHE466E, PHE97E, PRO230E, PRO239E, PRO29C, PRO8E, SER17C, SER206C, SER209C, SER210C, SER30C, SER31C, SER32C, SER33C, THR11E, THR211C, THR22C, THR231E, THR243E, TRP264C, TRP291E, TRP467E, TYR26C, TYR303C, TYR309C, VAL103E, VAL18C, VAL229E, VAL242E, VAL249E, VAL314C, VAL7E
• D-E: ASN165D, HIS3E
• E-F: ARG154E, ARG154F, ARG162E, ARG208E, ARG208F, ARG350E, ARG350F, ASN157E, ASN157F, ASN165E, ASN341E, ASN341F, ASN351E, ASN351F, ASN440F, ASP151E, ASP151F, ASP181E, ASP181F, ASP182E, ASP182F, ASP186E, ASP186F, ASP189E, ASP189F, ASP192E, ASP192F, CYS146E, CYS146F, CYS205E, CYS205F, CYS339E, CYS339F, GLN158E, GLN158F, GLU148E, GLU148F, GLU149E, GLU149F, GLU153E, GLU153F, GLY340E, GLY340F, GLY348F, HIS179E, HIS179F, HIS345E, HIS345F, HIS83E, HIS83F, ILE337E, ILE337F, LEU155E, LEU155F, LEU183E, LEU183F, LEU190E, LEU190F, LEU335E, LEU335F, LEU343E, LYS143E, LYS143F, LYS161E, LYS161F, LYS168E, LYS168F, LYS180E, LYS180F, LYS204E, LYS204F, LYS338E, LYS338F, LYS60E, LYS60F, PHE185E, PHE185F, PHE188E, PHE188F, PHE334E, PHE334F, PHE344E, PHE344F, PRO184E, PRO184F, PRO349E, PRO349F, PRO442E, PRO442F, SER147E, SER147F, SER206F, SER336E, SER336F, SER342E, SER342F, THR145E, THR145F, VAL150E, VAL150F, VAL152E, VAL152F, VAL187E, VAL187F, VAL352E, VAL352F