2VRT

crystal structure of e. coli rnase e possessing m1 rna fragments - catalytic domain

• Total interactions analyzed: 28
• Total true interactions: 6
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 98
  • Norm. En. per Res.: -3.9941
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-74.5994	49.6715	-483.506	-508.4339	211	51	13	20759	7	73	87
A-C	-78.7013	-20.7718	-220.235	-319.7081	89	12	5	9233	2	10	15
A-D	0.0	0.0	-0.4197	-0.4197	6	0	0	31	0	1	1
B-C	0.0	0.0	-0.1695	-0.1695	4	0	0	25	0	0	1
B-D	-75.2003	-16.2068	-300.01	-391.4171	98	20	8	11217	2	13	19
C-D	-107.6296	-36.8492	-619.522	-764.0008	233	55	13	24913	9	74	103

Interface residues

• A-B: ALA278A, ALA278B, ALA298A, ALA298B, ALA301A, ALA301B, ALA431A, ALA458B, ALA461A, ALA461B, ARG15A, ARG15B, ARG281A, ARG281B, ARG364A, ARG364B, ARG381A, ARG381B, ARG389A, ARG389B, ARG406B, ARG414A, ARG414B, ARG425A, ARG425B, ARG465A, ARG465B, ASN305A, ASN305B, ASN416A, ASN7B, ASP294A, ASP294B, ASP303A, ASP303B, ASP346A, ASP346B, ASP349B, ASP415A, ASP415B, CYS404A, CYS404B, CYS407A, CYS407B, GLN10A, GLN10B, GLN11A, GLN22B, GLN270A, GLN270B, GLN274A, GLN274B, GLN280A, GLN280B, GLN375A, GLN375B, GLN466A, GLN466B, GLU12A, GLU12B, GLU13A, GLU13B, GLU144A, GLU262A, GLU262B, GLU272A, GLU272B, GLU276A, GLU276B, GLU282A, GLU297A, GLU297B, GLU386A, GLU386B, GLU417A, GLU428A, GLU428B, GLU429A, GLU429B, GLU430A, GLU434A, GLU454B, GLU480A, GLY261A, GLY261B, GLY341A, GLY341B, GLY383A, GLY383B, GLY409B, GLY411B, HIS268A, HIS268B, HIS378A, HIS378B, HIS401B, HIS402A, HIS402B, ILE263A, ILE263B, ILE271A, ILE271B, ILE275A, ILE275B, ILE291A, ILE291B, ILE293A, ILE293B, ILE29A, ILE29B, ILE302A, ILE302B, ILE304A, ILE304B, ILE343A, ILE343B, ILE345A, ILE345B, ILE374A, ILE374B, ILE376A, ILE376B, ILE379A, ILE379B, ILE423A, ILE427A, ILE462A, ILE462B, LEU265A, LEU265B, LEU299A, LEU299B, LEU342A, LEU342B, LEU384A, LEU384B, LEU385A, LEU385B, LEU419A, LEU421A, LEU421B, LEU424A, LEU424B, LEU426A, LEU426B, LEU432A, LEU432B, LYS433A, LYS455B, MET387A, MET387B, PHE266B, PHE279A, PHE279B, PHE347A, PHE347B, PHE382A, PHE382B, PRO264A, PRO264B, PRO405B, PRO482A, PRO482B, SER267A, SER267B, SER273A, SER273B, SER277A, SER277B, SER290A, SER290B, SER295A, SER295B, SER31A, SER377A, SER377B, SER380A, SER380B, SER388A, SER388B, SER408B, SER418A, SER418B, SER422A, SER422B, SER457B, THR296A, THR296B, THR300A, THR300B, THR410B, THR412A, THR412B, THR464A, THR481A, THR481B, THR9A, THR9B, TYR259B, TYR269B, TYR450B, TYR484A, VAL292A, VAL292B, VAL344A, VAL344B, VAL403A, VAL403B, VAL413A, VAL413B, VAL486A
• A-C: ALA441A, ALA441C, ALA448A, ALA448C, ALA461A, ALA461C, ARG456A, ARG456C, ARG470A, ARG470C, ASN416A, ASN416C, ASN453A, ASN453C, ASN460A, ASN460C, ASN476A, ASN476C, ASP415A, ASP415C, ASP477A, ASP477C, CYS471A, CYS471C, GLN478A, GLN478C, GLU417A, GLU417C, GLU454A, GLU454C, GLU463A, GLU463C, HIS440C, ILE427C, ILE447A, ILE447C, ILE473A, ILE473C, LEU451A, LEU451C, LEU452A, LEU452C, LEU498A, LEU498C, LEU502A, LEU502C, LYS455A, LYS455C, MET479C, MET501A, MET501C, PRO444A, PRO444C, PRO446A, PRO446C, PRO475A, PRO475C, PRO496A, PRO496C, PRO503A, PRO503C, SER418A, SER418C, SER420A, SER420C, SER449A, SER449C, SER457A, SER457C, SER499A, SER499C, THR464C, THR497A, THR497C, TYR450A, TYR450C, TYR500A, TYR500C, VAL443A, VAL443C, VAL445A, VAL445C, VAL459A, VAL459C, VAL469C, VAL472A, VAL472C, VAL474A, VAL474C
• A-D: ARG470D, GLN478A, GLN478D, GLU12A, HIS402D, TYR500A
• B-C: GLN478B, GLN478C, HIS402C, TYR500B
• B-D: ALA441B, ALA441D, ALA448B, ALA448D, ALA458D, ALA461D, ARG456B, ARG456D, ARG470B, ARG470D, ASN416B, ASN416D, ASN453B, ASN453D, ASN460B, ASN460D, ASN476B, ASN476D, ASP415B, ASP415D, ASP477B, ASP477D, CYS471B, CYS471D, GLN478B, GLN478D, GLU417B, GLU417D, GLU454B, GLU454D, GLU463B, GLU463D, GLU480B, GLU480D, HIS440B, HIS440D, ILE427B, ILE427D, ILE442B, ILE447B, ILE447D, ILE462B, ILE462D, ILE473B, ILE473D, LEU451B, LEU451D, LEU452B, LEU452D, LEU498B, LEU498D, LEU502B, LEU502D, LYS455B, LYS455D, MET479B, MET479D, MET501B, MET501D, PRO444B, PRO444D, PRO446B, PRO446D, PRO475B, PRO475D, PRO496B, PRO496D, PRO503B, PRO503D, SER418B, SER420B, SER420D, SER449B, SER449D, SER457B, SER457D, SER499B, SER499D, THR464D, THR497B, THR497D, TYR450B, TYR450D, TYR500B, TYR500D, VAL439B, VAL443B, VAL443D, VAL445B, VAL445D, VAL459B, VAL459D, VAL469B, VAL469D, VAL472B, VAL472D, VAL474B, VAL474D
• C-D: ALA278C, ALA278D, ALA298C, ALA298D, ALA301C, ALA301D, ALA431C, ALA458D, ALA461C, ALA8C, ARG15C, ARG15D, ARG281C, ARG281D, ARG364C, ARG364D, ARG381C, ARG381D, ARG389C, ARG389D, ARG406C, ARG406D, ARG414C, ARG414D, ARG425C, ARG425D, ARG465C, ARG465D, ASN305C, ASN305D, ASN416C, ASN416D, ASN7C, ASP146C, ASP147D, ASP294C, ASP294D, ASP303C, ASP303D, ASP346C, ASP346D, ASP349C, ASP349D, ASP415C, ASP415D, CYS404C, CYS404D, CYS407C, CYS407D, GLN10C, GLN10D, GLN11C, GLN270C, GLN270D, GLN274D, GLN280C, GLN280D, GLN375C, GLN375D, GLN466C, GLN466D, GLU12C, GLU12D, GLU13C, GLU13D, GLU144C, GLU144D, GLU262C, GLU262D, GLU272C, GLU272D, GLU276C, GLU276D, GLU282C, GLU282D, GLU297C, GLU297D, GLU386C, GLU386D, GLU398C, GLU417C, GLU417D, GLU428C, GLU428D, GLU429C, GLU429D, GLU430C, GLU434C, GLU454D, GLU480C, GLU480D, GLY261C, GLY261D, GLY341C, GLY341D, GLY383C, GLY383D, GLY397C, GLY409C, GLY409D, GLY411C, GLY411D, HIS268C, HIS268D, HIS378C, HIS378D, HIS401C, HIS401D, HIS402C, HIS402D, ILE263C, ILE263D, ILE271C, ILE271D, ILE275C, ILE275D, ILE291C, ILE291D, ILE293C, ILE293D, ILE29C, ILE302C, ILE302D, ILE304C, ILE304D, ILE343C, ILE343D, ILE345C, ILE345D, ILE374C, ILE374D, ILE376C, ILE376D, ILE379C, ILE379D, ILE423C, ILE423D, ILE427C, ILE447C, ILE447D, ILE462C, ILE462D, LEU14C, LEU265D, LEU27C, LEU299C, LEU299D, LEU342C, LEU342D, LEU384C, LEU384D, LEU385C, LEU385D, LEU396C, LEU419C, LEU419D, LEU421C, LEU421D, LEU424C, LEU424D, LEU426C, LEU426D, LEU432C, LEU432D, LYS433C, LYS455D, MET387C, MET387D, PHE266C, PHE266D, PHE279C, PHE279D, PHE347C, PHE347D, PHE382C, PHE382D, PRO264C, PRO264D, PRO32C, PRO405C, PRO405D, PRO482C, PRO482D, SER267C, SER267D, SER273C, SER273D, SER277D, SER290D, SER295C, SER295D, SER31C, SER377C, SER377D, SER380C, SER380D, SER388C, SER388D, SER399C, SER399D, SER400C, SER400D, SER408C, SER408D, SER418C, SER418D, SER420D, SER422C, SER422D, THR296C, THR296D, THR300C, THR300D, THR410C, THR410D, THR412C, THR412D, THR481C, THR481D, THR9C, TYR259D, TYR269D, TYR450D, TYR484C, TYR484D, VAL292C, VAL292D, VAL344C, VAL344D, VAL403C, VAL403D, VAL413C, VAL413D