2VQZ

structure of the cap-binding domain of influenza virus polymerase subunit pb2 with bound m7gtp

• Total interactions analyzed: 10
• Total true interactions: 8
• Strongest Interaction:
  • Chains: B-F
  • Int. Res.: 52
  • Norm. En. per Res.: -2.2346
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-8.764	23.7636	-106.916	-91.9164	62	0	4	4630	1	21	23
A-D	0.0	9.0982	-90.8871	-81.7889	54	0	4	4224	1	21	23
A-F	-9.5541	-3.3961	-42.7898	-55.74	37	2	0	2042	0	11	8
B-E	-6.0217	24.7788	-113.257	-94.5	56	2	5	4738	1	23	22
B-F	-39.5132	35.4795	-112.167	-116.2007	52	6	2	4527	2	27	26
D-E	-3.3386	25.5068	-111.277	-89.1088	55	1	4	4688	1	22	23
D-F	0.0	9.3455	-13.9324	-4.5869	16	0	1	852	0	7	10
E-F	0.0	13.5633	-6.571	6.9923	22	0	1	603	0	8	9

Interface residues

• A-B: ALA377B, ALA413A, ALA442A, ARG332A, ARG332B, ARG340B, ARG375B, ARG379B, ARG380B, ARG415A, ARG476A, ASN348A, ASN448A, ASP441A, ASP466A, GLN383B, GLN447A, GLU342B, GLU358B, GLU361B, GLU362B, GLU452A, GLU472A, GLY335B, GLY347A, GLY359B, GLY450A, HIS357B, HIS453A, HIS4B, ILE338B, ILE451A, ILE454A, LEU349A, LEU445A, LEU464A, LYS331A, LYS339B, LYS376B, LYS412A, LYS443A, PHE446A, PRO465A, PRO469A, SER320A, SER334B, SER336B, SER337B, SER470A, SER474A, THR333A, THR333B, THR346A, THR378B, THR468A, THR471A, TRP449A, TYR360B, VAL356B, VAL382B, VAL414A, VAL444A
• A-D: ALA377A, ALA413D, ALA442D, ARG332A, ARG340A, ARG375A, ARG380A, ARG415D, ARG476D, ASN348D, ASN448D, ASP441D, ASP466D, GLN383A, GLN447D, GLU342A, GLU358A, GLU361A, GLU362A, GLU452D, GLU472D, GLY335A, GLY347D, GLY359A, GLY450D, HIS357A, HIS453D, ILE338A, ILE451D, ILE454D, LEU445D, LEU464D, LYS339A, LYS376A, LYS412D, LYS443D, PHE446D, PRO465D, PRO469D, SER334A, SER336A, SER337A, SER470D, SER474D, THR333A, THR378A, THR468D, THR471D, TRP449D, TYR360A, VAL356A, VAL382A, VAL414D, VAL444D
• A-F: ALA370F, ALA372F, ARG340A, ARG369F, ARG379A, ARG415A, ASN348A, ASP390F, ASP408A, ASP417A, GLN350A, GLU343A, GLY347A, GLY367F, GLY388F, GLY416A, GLY459F, ILE373F, ILE385F, ILE394F, LEU345A, LEU349A, LYS368F, LYS389F, LYS412A, LYS482F, PHE328F, SER387F, SER393F, SER481F, THR346A, THR351A, THR371F, VAL344A, VAL366F, VAL386F, VAL414A
• B-E: ALA377E, ALA413B, ALA442B, ARG332E, ARG340E, ARG375E, ARG379E, ARG380E, ARG415B, ARG476B, ASN348B, ASN448B, ASP441B, ASP466B, GLN383E, GLN447B, GLU342E, GLU358E, GLU361E, GLU362E, GLU452B, GLU472B, GLY335E, GLY347B, GLY359E, GLY416B, GLY450B, HIS357E, HIS453B, ILE338E, ILE451B, ILE454B, LEU445B, LEU464B, LYS339E, LYS376E, LYS412B, LYS443B, PHE446B, PRO465B, PRO469B, SER334E, SER336E, SER337E, SER470B, SER474B, THR333E, THR378E, THR468B, THR471B, TRP449B, TYR360E, VAL356E, VAL382E, VAL414B, VAL444B
• B-F: ALA395F, ALA442F, ARG340B, ARG369F, ARG379B, ARG415B, ASN348B, ASP390F, ASP408B, ASP417B, ASP441F, ASP466F, CYS409B, GLN350B, GLN392F, GLN439F, GLN447F, GLU341B, GLU342B, GLU343B, GLU391F, GLU396F, GLY347B, GLY388F, GLY416B, ILE354B, ILE394F, ILE398F, ILE399F, ILE411B, LEU345B, LEU349B, LEU352B, LEU445F, LEU464F, LYS353B, LYS389F, LYS412B, LYS440F, LYS443F, PHE438F, PHE446F, PRO465F, PRO469F, SER393F, THR346B, THR351B, THR468F, VAL344B, VAL356B, VAL444F, VAL463F
• D-E: ALA377D, ALA413E, ALA442E, ARG332D, ARG340D, ARG375D, ARG379D, ARG380D, ARG415E, ARG476E, ASN348E, ASN448E, ASP441E, ASP466E, GLN383D, GLN447E, GLU342D, GLU358D, GLU361D, GLU362D, GLU452E, GLU472E, GLY335D, GLY347E, GLY359D, GLY450E, HIS357D, HIS453E, ILE338D, ILE451E, ILE454E, LEU445E, LEU464E, LYS339D, LYS376D, LYS412E, LYS443E, PHE446E, PRO465E, PRO469E, SER334D, SER336D, SER337D, SER470E, SER474E, THR333D, THR378D, THR468E, THR471E, TRP449E, TYR360D, VAL356D, VAL382D, VAL414E, VAL444E
• D-F: ARG340D, ARG375F, ARG379D, ASN456F, ASP408D, ASP455F, GLU342D, GLU343D, GLY347D, HIS453F, LEU345D, LEU349D, LYS412D, THR346D, VAL344D, VAL457F
• E-F: ARG340E, ARG379E, ASP408E, ASP466F, CYS409E, GLN447F, GLU343E, GLU452F, GLU472F, GLY347E, GLY450F, HIS453F, ILE451F, ILE454F, LEU345E, LEU349E, LEU464F, LYS412E, PRO465F, SER470F, SER474F, VAL344E