2VQE
modified uridines with c5-methylene substituents at the first position of the trna anticodon stabilize u-g wobble pairing during decoding
Total interactions analyzed 276
Total true interactions 27
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -5.6901
Hub Node C(4)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -4.4015 -4.4015 7 5 0 306 0 2 4
B-E 0.0 0.0 -0.009 -0.009 5 0 0 10 0 1 2
B-H -23.1987 -47.0864 -74.2313 -144.5163 33 12 0 2953 2 18 17
C-D 0.0 0.0 -0.2785 -0.2785 4 0 0 63 0 0 6
C-E -2.6002 -25.2861 -10.4645 -38.3508 15 0 0 658 1 4 4
C-J 0.0 11.16 -74.1625 -63.0025 58 6 2 3309 0 14 24
C-N -16.1306 14.0711 -216.61 -218.6695 73 9 3 8948 0 19 39
D-E -6.1554 -23.0447 -42.6288 -71.8289 47 3 0 2374 4 6 10
E-H -42.3815 -39.7125 -136.998 -219.092 65 16 2 6503 2 43 43
F-O 0.0 0.0 -2.8237 -2.8237 5 0 0 181 0 3 2
F-R -72.6124 -47.6573 -281.081 -401.3507 88 22 7 10644 2 13 22
G-I 0.0 2.252 -39.7039 -37.4519 36 5 4 2214 0 5 8
G-K 0.0 0.0 -57.8727 -57.8727 27 0 3 2223 0 3 7
G-U 0.0 0.0 -0.0539 -0.0539 2 0 0 21 0 1 0
H-L 0.0 0.0 -9.7114 -9.7114 10 1 0 462 0 0 1
H-Q 0.0 3.1675 -27.7319 -24.5644 15 1 0 1235 0 2 9
I-J 0.0 -0.8777 -37.7344 -38.6121 18 0 0 1447 0 11 16
I-M 0.0 5.1316 -7.7745 -2.6429 6 9 0 548 0 0 5
I-N 0.0 0.0 -12.8683 -12.8683 8 1 0 526 0 0 0
J-N -47.7314 -46.6619 -218.561 -312.9542 55 25 7 8683 4 13 35
K-R -24.4387 -16.6051 -88.1313 -129.1752 38 12 2 3874 2 14 18
L-Q 0.0 0.0 -55.5965 -55.5965 23 0 4 2378 0 0 8
M-S -5.7306 20.2528 -74.4782 -59.956 43 5 0 3489 0 8 24
M-U 0.0 0.0 -2.2732 -2.2732 12 0 0 329 0 4 9
N-S 0.0 0.0 -0.2627 -0.2627 4 0 0 52 0 0 0
O-Q 0.0 0.0 -0.2872 -0.2872 10 0 0 84 0 6 6
S-U 0.0 0.0 -0.1303 -0.1303 2 0 0 50 0 0 0