2VMK

crystal structure of e. coli rnase e apoprotein - catalytic domain

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 97
  • Norm. En. per Res.: -3.6372
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-121.3957	-44.6843	-710.449	-876.529	243	61	13	28537	9	79	100
A-C	-14.138	0.0	-4.6119	-18.7499	8	2	0	204	0	1	3
A-D	-66.017	-15.2351	-242.829	-324.081	96	16	8	10130	2	12	18
B-C	-41.7701	-53.857	-257.178	-352.805	97	13	8	10204	4	12	18
B-D	0.0	-2.1499	-7.5447	-9.6946	44	1	0	744	0	33	43
C-D	-96.3967	69.138	-583.505	-610.7637	225	45	13	24297	6	72	88

Interface residues

• A-B: ALA278A, ALA278B, ALA298A, ALA298B, ALA301A, ALA301B, ALA307A, ALA431B, ALA458A, ALA461A, ALA461B, ALA509B, ALA511B, ALA8B, ARG142B, ARG15A, ARG15B, ARG281A, ARG281B, ARG284A, ARG308A, ARG337A, ARG337B, ARG364A, ARG364B, ARG381A, ARG381B, ARG389A, ARG389B, ARG406A, ARG406B, ARG414A, ARG414B, ARG425A, ARG425B, ARG465A, ARG465B, ARG488B, ASN305A, ASN305B, ASN416A, ASN416B, ASN7A, ASN7B, ASP147B, ASP232B, ASP294A, ASP294B, ASP303A, ASP303B, ASP346A, ASP346B, ASP349B, ASP415A, ASP415B, CYS404A, CYS404B, CYS407A, CYS407B, GLN10A, GLN270A, GLN274A, GLN280A, GLN280B, GLN375A, GLN375B, GLN390B, GLN466A, GLN466B, GLU13A, GLU144B, GLU262A, GLU272A, GLU272B, GLU276A, GLU276B, GLU282A, GLU282B, GLU297A, GLU297B, GLU386A, GLU386B, GLU398A, GLU398B, GLU417A, GLU417B, GLU428A, GLU428B, GLU429B, GLU430B, GLU434B, GLU454A, GLU480A, GLU480B, GLU508B, GLY261A, GLY288A, GLY289A, GLY341A, GLY341B, GLY383A, GLY383B, GLY397A, GLY397B, GLY409A, GLY409B, GLY411A, GLY411B, HIS268A, HIS378A, HIS378B, HIS401A, HIS401B, HIS402A, HIS402B, HIS483A, HIS483B, HIS485B, ILE263A, ILE271A, ILE275A, ILE275B, ILE291A, ILE291B, ILE293A, ILE293B, ILE29A, ILE29B, ILE302A, ILE302B, ILE304A, ILE304B, ILE343A, ILE343B, ILE345A, ILE345B, ILE374A, ILE374B, ILE376A, ILE376B, ILE379A, ILE379B, ILE423B, ILE427B, ILE447B, ILE462B, LEU14B, LEU265A, LEU285A, LEU299A, LEU299B, LEU339A, LEU342A, LEU342B, LEU384A, LEU384B, LEU385A, LEU385B, LEU419A, LEU419B, LEU421A, LEU421B, LEU424A, LEU424B, LEU426B, LEU432A, LEU432B, LEU487B, LEU512B, LYS433B, LYS455B, MET387A, MET387B, MET510B, PHE266A, PHE279A, PHE279B, PHE347A, PHE347B, PHE382A, PHE382B, PRO264A, PRO264B, PRO405A, PRO405B, PRO482A, PRO482B, PRO513B, SER267A, SER267B, SER273A, SER277A, SER277B, SER290A, SER290B, SER295A, SER295B, SER306A, SER377A, SER377B, SER380A, SER380B, SER388A, SER388B, SER399A, SER399B, SER400A, SER400B, SER408A, SER408B, SER418A, SER418B, SER420A, SER422A, SER422B, SER457A, THR296A, THR296B, THR300A, THR300B, THR410A, THR410B, THR412A, THR412B, THR464A, THR481A, THR481B, THR9A, THR9B, TYR259A, TYR269A, TYR450A, TYR484B, VAL283A, VAL292A, VAL292B, VAL344A, VAL344B, VAL403A, VAL403B, VAL413A, VAL413B, VAL486B
• A-C: ASP477A, ASP477C, GLN478A, GLN478C, HIS402C, MET479A, MET479C, TYR500A
• A-D: ALA441A, ALA441D, ALA448A, ALA448D, ALA458D, ALA461A, ALA461D, ARG456A, ARG456D, ARG470A, ARG470D, ASN416A, ASN416D, ASN453A, ASN453D, ASN460A, ASN460D, ASN476A, ASN476D, ASP415A, ASP415D, ASP477A, ASP477D, CYS471A, CYS471D, GLN478A, GLN478D, GLU417A, GLU417D, GLU454A, GLU454D, GLU463A, GLU463D, HIS440D, ILE427A, ILE427D, ILE447A, ILE447D, ILE462A, ILE462D, ILE473A, ILE473D, LEU419A, LEU451A, LEU451D, LEU452A, LEU452D, LEU498A, LEU498D, LEU502A, LEU502D, LYS455A, LYS455D, MET501A, MET501D, PRO444A, PRO444D, PRO446A, PRO446D, PRO475A, PRO475D, PRO496A, PRO496D, PRO503A, PRO503D, SER420A, SER420D, SER449A, SER449D, SER457A, SER457D, SER499A, SER499D, THR464A, THR464D, THR481A, THR497A, THR497D, TYR450A, TYR450D, TYR500A, TYR500D, VAL439A, VAL439D, VAL443A, VAL443D, VAL445A, VAL445D, VAL459A, VAL459D, VAL469A, VAL469D, VAL472A, VAL472D, VAL474A, VAL474D
• B-C: ALA441B, ALA441C, ALA448B, ALA448C, ALA458B, ALA458C, ALA461B, ALA461C, ARG456B, ARG456C, ARG470B, ARG470C, ASN416B, ASN416C, ASN453B, ASN453C, ASN460B, ASN460C, ASN476B, ASN476C, ASP415B, ASP415C, ASP477B, ASP477C, CYS471B, CYS471C, GLN478B, GLN478C, GLU417B, GLU417C, GLU454B, GLU454C, GLU463B, GLU463C, ILE427B, ILE427C, ILE447B, ILE447C, ILE462B, ILE462C, ILE473B, ILE473C, LEU451B, LEU451C, LEU452B, LEU452C, LEU498B, LEU498C, LEU502B, LEU502C, LYS455B, LYS455C, MET479B, MET479C, MET501B, MET501C, PRO444B, PRO444C, PRO446B, PRO446C, PRO475B, PRO475C, PRO496B, PRO496C, PRO503B, PRO503C, SER420B, SER420C, SER449B, SER449C, SER457B, SER457C, SER499B, SER499C, THR464C, THR481B, THR481C, THR497B, THR497C, TYR450B, TYR450C, TYR500B, TYR500C, VAL439B, VAL439C, VAL443B, VAL443C, VAL445B, VAL445C, VAL459B, VAL459C, VAL469B, VAL469C, VAL472B, VAL472C, VAL474B, VAL474C
• B-D: ARG109B, ARG109D, ARG470D, ARG490D, ASN435D, ASP467D, ASP477B, ASP477D, GLN437D, GLN478B, GLN478D, GLU107B, GLU107D, GLU108B, GLU108D, GLU35B, GLU398B, GLU398D, GLU438D, GLU493D, GLU494D, GLU507B, GLU507D, GLU515D, GLY110B, GLY397D, GLY468D, GLY492B, GLY492D, HIS34B, HIS402B, LEU396B, LEU396D, LEU498B, LEU498D, LYS491B, LYS491D, MET501B, PRO394B, PRO496B, PRO496D, SER395B, TYR500B, TYR500D
• C-D: ALA278C, ALA278D, ALA298C, ALA298D, ALA301C, ALA301D, ALA307C, ALA461C, ALA509D, ALA511D, ARG148C, ARG15C, ARG15D, ARG281C, ARG281D, ARG284C, ARG337C, ARG337D, ARG364C, ARG364D, ARG373C, ARG373D, ARG381C, ARG381D, ARG389C, ARG389D, ARG406C, ARG406D, ARG414C, ARG414D, ARG425C, ARG425D, ARG465C, ARG465D, ARG488D, ASN305C, ASN305D, ASN416C, ASN416D, ASN7D, ASP294C, ASP294D, ASP303C, ASP303D, ASP346C, ASP346D, ASP349C, ASP349D, ASP415C, ASP415D, ASP477D, CYS404C, CYS404D, CYS407C, CYS407D, GLN22C, GLN270C, GLN274C, GLN280C, GLN280D, GLN375C, GLN375D, GLN466D, GLN478D, GLU262C, GLU272C, GLU272D, GLU276C, GLU276D, GLU282C, GLU282D, GLU297C, GLU297D, GLU386C, GLU386D, GLU398D, GLU417C, GLU417D, GLU428D, GLU429D, GLU430D, GLU434D, GLU480C, GLU480D, GLU507D, GLU508D, GLU515D, GLY288C, GLY289C, GLY341C, GLY341D, GLY383C, GLY383D, GLY397D, GLY409C, GLY409D, GLY411C, GLY411D, HIS268C, HIS378C, HIS378D, HIS401C, HIS401D, HIS402C, HIS402D, HIS483C, HIS483D, HIS485D, HIS506D, ILE263C, ILE271C, ILE275C, ILE291C, ILE293C, ILE293D, ILE29D, ILE302C, ILE302D, ILE304C, ILE304D, ILE343C, ILE343D, ILE345C, ILE345D, ILE374C, ILE374D, ILE376C, ILE376D, ILE379D, ILE423D, ILE427D, ILE447D, LEU14D, LEU265C, LEU285C, LEU299C, LEU299D, LEU339C, LEU342C, LEU342D, LEU384C, LEU384D, LEU385C, LEU385D, LEU419C, LEU419D, LEU421C, LEU421D, LEU424D, LEU426D, LEU432C, LEU432D, LEU487D, LEU512D, LYS433D, LYS455C, MET387C, MET387D, MET479D, MET510D, PHE266C, PHE279C, PHE279D, PHE347C, PHE382C, PHE382D, PRO264C, PRO264D, PRO405C, PRO405D, PRO482C, PRO482D, PRO513D, SER267C, SER273C, SER277C, SER290C, SER290D, SER295C, SER295D, SER306C, SER377C, SER377D, SER380C, SER380D, SER388C, SER388D, SER399D, SER400D, SER408C, SER408D, SER418C, SER418D, SER422C, SER422D, SER457C, SER514D, THR296C, THR296D, THR300C, THR300D, THR322C, THR410C, THR410D, THR412C, THR412D, THR464C, THR481C, THR481D, THR9D, TYR259C, TYR269C, TYR450C, TYR484D, VAL173C, VAL283C, VAL292C, VAL292D, VAL344C, VAL344D, VAL403C, VAL403D, VAL413C, VAL413D, VAL486D