2VL5

structure of anti-collagen type ii fab ciic1

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 188
  • Norm. En. per Res.: -2.8035
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-7.0502	-36.3198	-456.039	-499.409	181	4	10	17951	1	20	12
A-C	-36.8694	-12.967	-35.3966	-85.233	42	6	0	1890	2	10	8
A-D	0.0	0.0	-0.0393	-0.0393	3	0	0	24	0	1	0
C-D	-11.0174	-56.7405	-459.302	-527.0599	188	14	11	18087	2	21	11

Interface residues

• A-B: ALA107A, ALA131A, ALA134B, ALA174A, ALA55B, ALA97A, ARG215B, ARG54B, ARG59A, ARG98A, ASN141B, ASN142B, ASN165B, ASN214B, ASN216B, ASN34B, ASN35A, ASN57B, ASN96B, ASP169B, ASP171B, ASP174B, ASP1B, ASP98B, CYS134A, CYS138B, CYS146A, CYS92B, CYS96A, GLN111A, GLN128B, GLN177A, GLN39A, GLN41B, GLN42B, GLN43A, GLN46B, GLN62A, GLN6A, GLN93B, GLN94B, GLU127B, GLU217A, GLU217B, GLU38B, GLU46A, GLU59B, GLU97B, GLY102A, GLY103A, GLY103B, GLY104B, GLY105B, GLY110A, GLY112A, GLY133B, GLY135A, GLY145A, GLY162B, GLY168A, GLY42A, GLY44A, GLY45B, GLY49A, HIS170A, ILE121B, ILE216A, ILE48A, ILE52B, LEU129B, LEU130A, LEU140B, LEU144A, LEU147A, LEU164B, LEU176A, LEU183A, LEU185B, LEU45A, LEU50B, LEU51B, LEU60A, LEU99A, LYS100A, LYS107B, LYS149A, LYS173B, LYS211B, LYS214A, LYS215A, LYS38A, LYS43B, LYS49B, LYS63A, MET179B, MET37B, MET50A, PHE102B, PHE106A, PHE122B, PHE139B, PHE143B, PHE172A, PHE213B, PHE36B, PHE64A, PRO123B, PRO124B, PRO129A, PRO132A, PRO173A, PRO44B, PRO47B, PRO48B, PRO99B, SER120B, SER125B, SER126A, SER126B, SER131B, SER135B, SER141A, SER166A, SER166B, SER167A, SER178A, SER178B, SER180B, SER181B, SER184A, SER185A, SER186A, SER212B, SER35B, SER60B, SER61A, SER95B, THR101B, THR104A, THR118B, THR130B, THR143A, THR168B, THR171A, THR176B, THR182A, THR182B, THR184B, THR188A, THR89B, TRP105A, TRP109A, TRP160A, TRP167B, TRP33A, TRP36A, TRP39B, TRP47A, TYR100B, TYR108A, TYR128A, TYR177B, TYR40B, TYR53B, TYR90B, TYR91B, TYR95A, VAL119B, VAL127A, VAL133A, VAL136B, VAL137B, VAL142A, VAL148A, VAL163B, VAL169A, VAL175A, VAL187A, VAL37A, VAL3B, VAL93A
• A-C: ALA124C, ALA207A, ALA207C, ARG13A, ASP73A, GLN82A, GLU217C, GLY15A, HIS205C, LEU180C, LEU83A, LYS121C, LYS19A, LYS211C, LYS215C, LYS74A, PRO125C, PRO206A, PRO206C, PRO86A, SER17A, SER198C, SER208A, SER208C, SER209A, SER209C, SER75A, SER76A, SER84A, SER85A, THR122A, THR122C, THR123C, THR210C, THR69A, THR71A, TYR80A, VAL12A, VAL16A, VAL18A, VAL212C, VAL72A
• A-D: LYS23A, SER131D, THR130D
• C-D: ALA107C, ALA131C, ALA134D, ALA174C, ALA55D, ALA97C, ARG215D, ARG40C, ARG54D, ARG59C, ARG98C, ASN141D, ASN142D, ASN161D, ASN165D, ASN214D, ASN216D, ASN34D, ASN35C, ASN57D, ASN96D, ASP169D, ASP171D, ASP174D, ASP1D, ASP98D, CYS134C, CYS138D, CYS146C, CYS92D, CYS96C, GLN111C, GLN128D, GLN170D, GLN177C, GLN39C, GLN42D, GLN43C, GLN46D, GLN62C, GLN6C, GLN6D, GLN93D, GLN94D, GLU127D, GLU217C, GLU38D, GLU46C, GLU59D, GLU97D, GLY102C, GLY103C, GLY103D, GLY104D, GLY105D, GLY110C, GLY112C, GLY132D, GLY133D, GLY145C, GLY150C, GLY162D, GLY168C, GLY44C, GLY45D, GLY49C, HIS170C, ILE121D, ILE216C, ILE48C, ILE52D, LEU129D, LEU130C, LEU140D, LEU144C, LEU147C, LEU164D, LEU176C, LEU180C, LEU183C, LEU183D, LEU185D, LEU45C, LEU4C, LEU50D, LEU60C, LEU99C, LYS100C, LYS149C, LYS173D, LYS211D, LYS214C, LYS215C, LYS38C, LYS43D, LYS49D, LYS63C, MET179D, MET37D, MET50C, PHE102D, PHE106C, PHE122D, PHE139D, PHE143D, PHE172C, PHE213D, PHE36D, PHE64C, PRO123D, PRO124D, PRO129C, PRO132C, PRO173C, PRO41C, PRO44D, PRO47D, PRO48D, PRO99D, SER120D, SER125D, SER126C, SER126D, SER131D, SER135D, SER141C, SER166C, SER166D, SER167C, SER172D, SER178D, SER180D, SER181D, SER184C, SER185C, SER186C, SER212D, SER31D, SER35D, SER60D, SER61C, SER95D, THR101D, THR104C, THR118D, THR130D, THR138C, THR143C, THR168D, THR171C, THR176D, THR182C, THR182D, THR184D, THR188C, THR89D, TRP105C, TRP109C, TRP160C, TRP167D, TRP33C, TRP36C, TRP39D, TRP47C, TYR100D, TYR108C, TYR128C, TYR177D, TYR181C, TYR40D, TYR53D, TYR90D, TYR91D, TYR95C, VAL119D, VAL127C, VAL133C, VAL136D, VAL137D, VAL142C, VAL148C, VAL163D, VAL169C, VAL175C, VAL187C, VAL37C, VAL3D, VAL93C