2VDU

structure of trm8-trm82, the yeast trna m7g methylation complex

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: D-F
  • Int. Res.: 96
  • Norm. En. per Res.: -3.0221
• Hub Node: B(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-E	-26.89	-27.8208	-220.152	-274.8629	94	7	3	8955	2	22	21
B-F	0.0	0.0	-9.6076	-9.6076	13	2	0	406	0	9	5
D-E	0.0	0.0	-6.7834	-6.7834	11	0	0	330	0	7	3
D-F	-20.9038	-38.8086	-230.405	-290.1174	96	11	4	9189	3	23	26
E-F	-38.099	0.8839	-220.006	-257.2211	87	7	2	9157	0	19	23

Interface residues

• B-E: ALA162E, ALA206E, ALA284E, ARG195E, ARG218B, ARG279E, ASN161E, ASN168E, ASN199E, ASP172B, ASP206B, ASP208B, ASP217B, ASP219B, ASP234B, ASP75E, CYS230B, GLN211B, GLN229B, GLN74E, GLU171E, GLU189B, GLU204E, GLU220B, GLU234E, GLY171B, GLY193B, GLY239B, HIS194B, HIS210B, HIS221B, HIS226B, HIS231E, HIS235E, HIS240B, HIS242B, ILE191B, ILE196E, ILE224B, ILE232B, ILE285E, LEU166E, LEU192B, LEU201E, LEU202E, LEU237B, LEU237E, LEU280E, LEU286E, LEU67E, LYS164E, LYS172E, LYS223B, LYS235B, LYS241B, LYS270B, MET163E, MET197B, PHE165E, PHE169E, PHE170E, PHE212B, PHE231B, PHE238B, PHE238E, PHE243B, PHE265B, PRO167E, PRO190B, PRO228B, PRO236E, PRO281E, PRO283E, PRO70E, PRO73E, SER196B, SER203E, SER225B, SER72E, THR198E, THR200E, THR282E, TRP227E, TRP236B, TRP267B, TYR205E, TYR207E, TYR227B, TYR69E, VAL173B, VAL195B, VAL208E, VAL233B, VAL71E
• B-F: ASN248F, CYS230B, GLN229B, GLU244F, GLU247F, GLU250F, HIS210B, HIS226B, ILE232B, LYS253F, PHE231B, PRO228B, TRP245F
• D-E: ASN248E, CYS230D, GLN229D, GLU244E, GLU247E, GLU250E, HIS210D, ILE232D, PHE231D, PRO228D, TRP245E
• D-F: ALA162F, ALA206F, ALA284F, ARG195F, ARG218D, ARG279F, ASN161F, ASN168F, ASN199F, ASN274D, ASP172D, ASP206D, ASP208D, ASP217D, ASP219D, ASP234D, ASP261D, ASP75F, CYS230D, GLN211D, GLN229D, GLN74F, GLU171F, GLU189D, GLU204F, GLU220D, GLU234F, GLY171D, GLY193D, GLY239D, HIS194D, HIS210D, HIS221D, HIS226D, HIS231F, HIS235F, HIS240D, HIS242D, ILE191D, ILE196F, ILE222D, ILE224D, ILE232D, ILE285F, LEU166F, LEU192D, LEU201F, LEU202F, LEU237D, LEU237F, LEU280F, LEU286F, LEU67F, LYS164F, LYS172F, LYS223D, LYS235D, LYS241D, LYS270D, MET163F, MET197D, PHE165F, PHE169F, PHE170D, PHE170F, PHE212D, PHE231D, PHE238D, PHE238F, PHE265D, PRO167F, PRO190D, PRO228D, PRO236F, PRO281F, PRO283F, PRO70F, PRO73F, SER196D, SER203F, SER225D, SER72F, THR198F, THR200F, THR282F, TRP236D, TRP267D, TYR205F, TYR207F, TYR227D, TYR69F, VAL173D, VAL195D, VAL208F, VAL233D, VAL71F
• E-F: ALA116E, ALA116F, ALA284E, ALA284F, ARG240E, ARG240F, ARG279E, ARG279F, ASN248E, ASN248F, ASP112F, ASP249E, ASP249F, CYS251E, CYS251F, CYS276E, CYS276F, GLU211E, GLU211F, GLU234E, GLU234F, GLU239E, GLU239F, GLU244E, GLU244F, GLU246E, GLU246F, GLU247E, GLU247F, GLU250E, GLU250F, GLY212E, GLY212F, GLY213E, GLY213F, HIS235E, ILE254E, ILE254F, ILE285E, ILE285F, LEU113F, LEU237E, LEU237F, LEU241E, LEU241F, LEU280E, LEU280F, LEU286E, LEU286F, LYS177E, LYS177F, LYS210E, LYS210F, LYS253E, LYS253F, PHE117E, PHE117F, PHE277E, PHE277F, PRO115E, PRO115F, PRO118E, PRO118F, PRO236E, PRO236F, PRO281E, PRO281F, PRO283E, PRO283F, SER176E, SER176F, SER242E, SER242F, THR278E, THR278F, THR282E, THR282F, TRP245E, TRP245F, TYR216E, TYR216F, VAL214E, VAL214F, VAL215E, VAL215F, VAL252E, VAL252F