2VDH
crystal structure of chlamydomonas reinhardtii rubisco with a large-subunit c172s mutation
Total interactions analyzed 120
Total true interactions 60
Strongest Interaction Chains G-J
Int. Res. 42
Norm. En. per Res. -3.7128
Hub Node A(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -305.7166 -99.1965 -1062.05 -1466.9631 408 48 30 59609 24 95 93
A-C -11.57 -41.5493 -89.5974 -142.7167 54 2 1 4188 4 23 28
A-D -19.8637 -46.3891 -62.3071 -128.5599 63 3 1 3814 2 28 19
A-G -22.5842 -40.544 -99.2847 -162.4129 56 2 1 4402 4 24 30
A-I -82.6153 -0.6416 -514.196 -597.4529 169 19 6 19296 4 36 35
A-L 0.0 0.0 -106.95 -106.95 36 0 4 3932 0 3 3
A-M 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 2 0
A-O -49.6054 -32.5025 -263.234 -345.3419 97 10 7 10445 2 25 27
B-D -18.325 -39.4353 -88.4827 -146.243 53 2 1 4186 4 24 30
B-G -13.3784 -47.7043 -79.3581 -140.4408 63 7 1 3895 2 28 18
B-H -12.2862 -40.8496 -96.0137 -149.1495 56 4 1 4315 4 24 29
B-J -62.8552 1.3494 -513.37 -574.8759 169 15 7 19312 4 37 35
B-L -47.7419 -33.322 -259.514 -340.5779 98 9 5 10188 2 26 26
B-N 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 2 0
B-O -11.795 5.2444 -129.392 -135.9426 42 3 3 4837 0 5 5
C-D -304.1227 -96.6873 -934.055 -1334.865 410 38 30 59188 24 96 92
C-E -11.7596 -40.1599 -92.1297 -144.0492 55 4 1 4270 4 24 29
C-F -18.5219 -45.292 -79.1695 -142.9833 62 4 1 3882 2 28 18
C-I -44.4816 -34.3833 -260.957 -339.8219 100 10 6 10283 2 26 26
C-K -78.8479 -0.7154 -501.392 -580.9552 170 16 7 19209 4 36 36
C-N -12.6949 0.0 -122.844 -135.5389 40 1 4 4369 0 3 4
C-O 0.0 0.0 -0.0007 -0.0007 2 0 0 2 0 2 0
D-F -22.885 -39.3974 -98.8943 -161.1768 56 5 1 4362 4 24 28
D-I 0.0 0.0 -103.456 -103.456 36 1 3 3872 0 3 3
D-L -68.1626 -3.2424 -503.012 -574.417 170 18 7 19195 3 35 35
D-N -55.6777 -31.6348 -258.957 -346.2695 98 11 6 10290 2 25 27
D-P 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 2 0
E-F -307.5474 -98.6778 -940.623 -1346.8482 408 49 29 59297 24 96 94
E-G -10.459 -41.5518 -90.256 -142.2668 54 4 1 4163 4 23 30
E-H -11.6177 -28.8913 -66.7231 -107.232 62 6 1 3875 2 28 19
E-I 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 2 0
E-K -39.7889 -34.0264 -261.185 -335.0003 98 13 5 10303 2 25 27
E-M -64.6767 -4.0837 -492.408 -561.1684 168 14 6 18948 4 36 35
E-P 0.0 0.0 -101.925 -101.925 36 0 4 3818 0 3 3
F-H -20.9436 -40.0769 -89.434 -150.4544 56 4 1 4262 4 23 28
F-J 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 2 0
F-K -10.9242 0.0 -119.017 -129.9412 40 1 4 4253 0 3 3
F-N -74.9528 3.0876 -502.404 -574.2692 171 20 6 19219 4 36 35
F-P -40.8465 -32.2208 -254.221 -327.2883 99 15 5 10302 2 26 26
G-H -331.015 -97.5988 -1031.75 -1460.3638 410 48 30 59184 24 96 93
G-J -20.2492 0.0 -135.687 -155.9362 42 2 4 4535 0 3 4
G-K 0.0 0.0 -0.0008 -0.0008 2 0 0 2 0 2 0
G-M -53.2223 -32.5873 -261.847 -347.6566 98 12 5 10223 2 26 26
G-O -57.2625 -0.0545 -507.148 -564.4649 171 16 7 19143 4 37 35
H-J -44.2699 -31.1522 -270.4 -345.8221 98 11 7 10403 2 25 27
H-L 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 2 0
H-M 0.0 0.0 -109.586 -109.586 37 0 4 3959 0 3 4
H-P -75.5146 -4.0862 -509.98 -589.5808 168 16 6 19258 3 36 35
I-K -26.7586 0.0 -114.733 -141.4916 62 3 4 4924 0 9 6
I-M 0.0 0.0 -0.148 -0.148 6 0 0 55 0 0 1
I-O -17.0636 0.0 -123.811 -140.8746 63 4 4 5152 0 9 7
J-L -16.7091 0.0 -120.764 -137.4731 63 4 4 5032 0 9 7
J-N 0.0 0.0 -0.0741 -0.0741 3 0 0 39 0 0 1
J-P -13.6106 0.0 -120.379 -133.9896 62 3 4 5037 0 9 7
K-M -20.5997 0.0 -130.474 -151.0737 62 3 4 5239 0 9 9
K-O 0.0 0.0 -0.0644 -0.0644 3 0 0 31 0 0 1
L-N -16.345 0.0 -125.537 -141.882 63 1 4 5150 0 9 7
L-P 0.0 0.0 -0.1034 -0.1034 5 0 0 46 0 0 1
M-O -20.92 0.0 -115.554 -136.474 62 5 4 4933 0 9 7
N-P -14.5332 0.0 -117.643 -132.1762 62 2 4 4957 0 9 7