2VDC

the 9.5 a resolution structure of glutamate synthase from cryo-electron microscopy and its oligomerization behavior in solution: functional implications.

• Total interactions analyzed: 66
• Total true interactions: 21
• Strongest Interaction:
  • Chains: A-E
  • Int. Res.: 15
  • Norm. En. per Res.: -11.9031
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-73.1891	-141.9247	-481.935	-697.0488	267	33	8	21145	14	104	85
A-C	-135.1035	-43.674	223.936	45.1586	91	136	2	9324	4	52	37
A-E	-134.8778	-43.6683	0.0	-178.546	15	0	0	0	0	0	0
A-J	-54.306	6.5712			17
A-L	-29.3037	54.7162			7
B-D	-63.6545	-61.8204	341.538	216.0631	94	120	2	9356	5	53	38
B-F	-63.6082	-61.8072			21
B-G	-55.0786	35.7261			18
B-H	-58.6557	58.1551			10
C-D	-73.1852	-141.9208	-481.932	-697.038	267	33	8	21148	14	104	85
C-E	-135.0283	-43.6983	-3.5393	-182.2659	18	0	0	202	1	4	4
C-J	-29.3029	54.7124			7
C-K	-54.2765	6.5727			17
D-F	-63.4772	-61.837			21
D-H	-55.0981	35.733			18
D-I	-58.6051	58.1981			10
E-F	-73.1778	-141.9177			37
E-K	-29.277	54.7648			7
E-L	-54.3664	6.5717			17
F-G	-58.6571	58.1565			10
F-I	-55.074	35.7282			18

Interface residues

• A-B: ALA1188A, ALA1188B, ALA1196A, ALA1196B, ALA123A, ALA123B, ALA733A, ALA733B, ALA736A, ALA736B, ALA88A, ALA88B, ALA99A, ALA99B, ARG1060A, ARG1060B, ARG108A, ARG108B, ARG1173A, ARG1173B, ARG1186A, ARG1186B, ARG1197A, ARG1197B, ARG125A, ARG125B, ARG583A, ARG583B, ARG587A, ARG587B, ARG65A, ARG65B, ARG732A, ARG732B, ARG745A, ARG745B, ARG80A, ARG80B, ARG832A, ARG832B, ARG90A, ARG90B, ASN1059A, ASN1059B, ASN113A, ASN113B, ASN1184A, ASN1184B, ASN1195A, ASN1195B, ASN122A, ASN122B, ASN136B, ASN165A, ASN165B, ASN214A, ASN214B, ASP115A, ASP115B, ASP1166A, ASP1166B, ASP1179A, ASP1179B, ASP1180A, ASP1180B, ASP1182A, ASP1182B, ASP1191A, ASP1191B, ASP166A, ASP166B, ASP84A, ASP84B, CYS89A, CYS89B, CYS91A, CYS91B, GLN1054A, GLN1054B, GLN109A, GLN109B, GLN1170A, GLN1170B, GLN1189A, GLN1189B, GLN130A, GLN130B, GLN163A, GLN163B, GLN86A, GLN86B, GLU1051A, GLU1051B, GLU1194A, GLU1194B, GLU119A, GLU119B, GLU127A, GLU127B, GLU129A, GLU129B, GLU162A, GLU162B, GLU737A, GLU737B, GLU830A, GLU830B, GLU87A, GLU87B, GLU94A, GLU94B, GLU96A, GLU96B, GLY1005A, GLY1005B, GLY1007A, GLY1007B, GLY106A, GLY106B, GLY1193A, GLY1193B, GLY161A, GLY161B, GLY268A, GLY268B, GLY270A, GLY270B, GLY63A, GLY63B, GLY748A, GLY748B, GLY750A, GLY750B, HIS1169A, HIS1169B, HIS1177B, HIS58A, HIS58B, HIS64A, HIS64B, ILE104A, ILE104B, ILE112A, ILE112B, ILE116A, ILE116B, ILE128A, ILE128B, ILE131A, ILE131B, ILE164A, ILE164B, ILE267A, ILE267B, ILE62A, ILE62B, ILE746A, ILE746B, ILE81A, ILE81B, ILE92A, ILE92B, ILE97B, LEU1056A, LEU1056B, LEU1058A, LEU1058B, LEU1178A, LEU1178B, LEU1181A, LEU1181B, LEU1183A, LEU1183B, LEU1187A, LEU1187B, LEU734A, LEU734B, LEU751B, LEU78A, LEU78B, LEU828A, LEU828B, LEU83A, LEU83B, LEU98A, LEU98B, LYS120A, LYS120B, LYS157A, LYS157B, LYS160A, LYS160B, LYS245A, LYS245B, LYS60A, LYS60B, MET742A, MET742B, PHE191A, PHE191B, PHE216A, PHE216B, PRO111A, PRO111B, PRO1185A, PRO1185B, PRO1192A, PRO1192B, PRO126A, PRO126B, PRO265A, PRO265B, SER1004A, SER1004B, SER1050A, SER1050B, SER1172A, SER1172B, SER731A, SER731B, SER744A, SER744B, SER747A, SER747B, SER82A, SER82B, THR1008A, THR1008B, THR1057A, THR1057B, THR1165A, THR1165B, THR215A, THR215B, THR95A, THR95B, TRP107A, TRP107B, TYR103A, TYR103B, TYR105A, TYR105B, TYR1198A, VAL1052A, VAL1052B, VAL1055A, VAL1055B, VAL110A, VAL110B, VAL114A, VAL114B, VAL1171A, VAL1171B, VAL1190A, VAL1190B, VAL269A, VAL269B, VAL59A, VAL59B, VAL61A, VAL61B, VAL735A, VAL735B, VAL743A, VAL743B, VAL93A, VAL93B
• A-C: ALA1217C, ALA1219C, ALA1232C, ALA848A, ALA874A, ALA880A, ALA906A, ARG1147A, ARG1214C, ARG1220C, ARG1236C, ARG1267C, ARG1269C, ARG1308C, ARG850A, ARG877A, ARG893A, ARG895A, ARG926A, ASN1137A, ASN1234C, ASN804A, ASN872A, ASN876A, ASN899A, ASN902A, ASN904A, ASP1218C, ASP805A, ASP841A, ASP897A, ASP901A, CYS925A, GLN1230C, GLN1260C, GLN1436C, GLN924A, GLU1133A, GLU1144A, GLU1224C, GLU1225C, GLU1227C, GLU842A, GLU844A, GLY1226C, GLY1258C, GLY1262C, GLY879A, GLY900A, HIS1263C, ILE1215C, ILE1264C, ILE1266C, ILE846A, ILE849A, ILE878A, LEU1211C, LEU1222C, LEU1231C, LEU1259C, LYS1228C, LYS373C, LYS851A, LYS898A, LYS908A, MET1229C, MET875A, PHE1141A, PHE1223C, PHE1254C, PHE894A, PRO1132A, PRO1221C, PRO1261C, PRO839A, PRO896A, SER1312C, SER806A, SER845A, SER905A, THR1140A, THR1265C, THR1311C, THR808A, THR847A, TRP903A, TYR1233C, TYR807A, VAL1136A, VAL840A, VAL873A
• A-E: ARG1236A, ARG1269A, ARG877E, ASN902E, ASP1218A, ASP841E, ASP897E, ASP901E, GLN1230A, GLU1225A, GLU1227A, HIS1263A, LYS1228A, LYS373A, LYS851E
• A-J: ARG681A, ARG782A, ASP67J, CYS1113A, CYS50J, GLN112J, GLU111J, GLU462A, GLU481J, GLU74J, GLU768A, GLY51J, HIS58J, HIS796A, LYS1127A, LYS70J, LYS783A
• A-L: ARG1438A, ARG377L, ASP1446A, ASP373L, GLU1316A, GLU1442A, GLY376L
• B-D: ALA1217B, ALA1219B, ALA1232B, ALA848D, ALA874D, ALA880D, ALA906D, ARG1147D, ARG1214B, ARG1220B, ARG1236B, ARG1267B, ARG1269B, ARG1308B, ARG850D, ARG877D, ARG893D, ARG895D, ARG926D, ASN1137D, ASN1234B, ASN804D, ASN872D, ASN876D, ASN899D, ASN902D, ASN904D, ASP1218B, ASP805D, ASP841D, ASP897D, ASP901D, CYS925D, GLN1230B, GLN1260B, GLN1436B, GLN924D, GLU1133D, GLU1144D, GLU1224B, GLU1225B, GLU1227B, GLU842D, GLU844D, GLY1226B, GLY1258B, GLY1262B, GLY879D, GLY900D, HIS1263B, ILE1215B, ILE1264B, ILE1266B, ILE846D, ILE849D, ILE878D, LEU1211B, LEU1222B, LEU1231B, LEU1259B, LYS1228B, LYS1253B, LYS373B, LYS851D, LYS898D, LYS908D, MET1229B, MET875D, PHE1141D, PHE1223B, PHE1254B, PHE894D, PRO1132D, PRO1221B, PRO1261B, PRO839D, PRO896D, SER1312B, SER806D, SER845D, SER882D, SER905D, THR1140D, THR1265B, THR1311B, THR808D, THR847D, TRP903D, TYR1233B, TYR807D, VAL1136D, VAL840D, VAL843D, VAL873D
• B-F: ALA1232F, ARG1236F, ARG1267F, ARG1269F, ARG850B, ARG877B, ASN902B, ASP1218F, ASP805B, ASP841B, ASP897B, ASP901B, GLN1230F, GLU1225F, GLU1227F, HIS1263F, LYS1228F, LYS373F, LYS851B, LYS898B, THR847B
• B-G: ARG681B, ARG782B, ASP67G, CYS1113B, CYS50G, GLN112G, GLU111G, GLU462B, GLU481G, GLU74G, GLU768B, GLY51G, HIS58G, HIS796B, LYS1127B, LYS70G, LYS783B, VAL57G
• B-H: ARG1438B, ARG1449B, ARG377H, ASP1446B, ASP373H, GLU1316B, GLU1442B, GLU1450B, GLY376H, SER386H
• C-D: ALA1188C, ALA1188D, ALA1196C, ALA1196D, ALA123C, ALA123D, ALA733C, ALA733D, ALA736C, ALA736D, ALA88C, ALA88D, ALA99C, ALA99D, ARG1060C, ARG1060D, ARG108C, ARG108D, ARG1173C, ARG1173D, ARG1186C, ARG1186D, ARG1197C, ARG1197D, ARG125C, ARG125D, ARG583C, ARG583D, ARG587C, ARG587D, ARG65C, ARG65D, ARG732C, ARG732D, ARG745C, ARG745D, ARG80C, ARG80D, ARG832C, ARG832D, ARG90C, ARG90D, ASN1059C, ASN1059D, ASN113C, ASN113D, ASN1184C, ASN1184D, ASN1195C, ASN1195D, ASN122C, ASN122D, ASN136D, ASN165C, ASN165D, ASN214C, ASN214D, ASP115C, ASP115D, ASP1166C, ASP1166D, ASP1179C, ASP1179D, ASP1180C, ASP1180D, ASP1182C, ASP1182D, ASP1191C, ASP1191D, ASP166C, ASP166D, ASP84C, ASP84D, CYS89C, CYS89D, CYS91C, CYS91D, GLN1054C, GLN1054D, GLN109C, GLN109D, GLN1170C, GLN1170D, GLN1189C, GLN1189D, GLN130C, GLN130D, GLN163C, GLN163D, GLN86C, GLN86D, GLU1051C, GLU1051D, GLU1194C, GLU1194D, GLU119C, GLU119D, GLU127C, GLU127D, GLU129C, GLU129D, GLU162C, GLU162D, GLU737C, GLU737D, GLU830C, GLU830D, GLU87C, GLU87D, GLU94C, GLU94D, GLU96C, GLU96D, GLY1005C, GLY1005D, GLY1007C, GLY1007D, GLY106C, GLY106D, GLY1193C, GLY1193D, GLY161C, GLY161D, GLY268C, GLY268D, GLY270C, GLY270D, GLY63C, GLY63D, GLY748C, GLY748D, GLY750C, GLY750D, HIS1169C, HIS1169D, HIS1177D, HIS58C, HIS58D, HIS64C, HIS64D, ILE104C, ILE104D, ILE112C, ILE112D, ILE116C, ILE116D, ILE128C, ILE128D, ILE131C, ILE131D, ILE164C, ILE164D, ILE267C, ILE267D, ILE62C, ILE62D, ILE746C, ILE746D, ILE81C, ILE81D, ILE92C, ILE92D, ILE97D, LEU1056C, LEU1056D, LEU1058C, LEU1058D, LEU1178C, LEU1178D, LEU1181C, LEU1181D, LEU1183C, LEU1183D, LEU1187C, LEU1187D, LEU734C, LEU734D, LEU751D, LEU78C, LEU78D, LEU828C, LEU828D, LEU83C, LEU83D, LEU98C, LEU98D, LYS120C, LYS120D, LYS157C, LYS157D, LYS160C, LYS160D, LYS245C, LYS245D, LYS60C, LYS60D, MET742C, MET742D, PHE191C, PHE191D, PHE216C, PHE216D, PRO111C, PRO111D, PRO1185C, PRO1185D, PRO1192C, PRO1192D, PRO126C, PRO126D, PRO265C, PRO265D, SER1004C, SER1004D, SER1050C, SER1050D, SER1172C, SER1172D, SER731C, SER731D, SER744C, SER744D, SER747C, SER747D, SER82C, SER82D, THR1008C, THR1008D, THR1057C, THR1057D, THR1165C, THR1165D, THR215C, THR215D, THR95C, THR95D, TRP107C, TRP107D, TYR103C, TYR103D, TYR105C, TYR105D, TYR1198C, VAL1052C, VAL1052D, VAL1055C, VAL1055D, VAL110C, VAL110D, VAL114C, VAL114D, VAL1171C, VAL1171D, VAL1190C, VAL1190D, VAL269C, VAL269D, VAL59C, VAL59D, VAL61C, VAL61D, VAL735C, VAL735D, VAL743C, VAL743D, VAL93C, VAL93D
• C-E: ARG1236E, ARG1269E, ARG877C, ASN902C, ASP1218E, ASP841C, ASP897C, ASP901C, GLN1230E, GLU1225E, GLU1227E, GLU842C, HIS1263E, LYS1228E, LYS373E, LYS851C, PRO839C, VAL840C
• C-J: ARG1438C, ARG377J, ASP1446C, ASP373J, GLU1316C, GLU1442C, GLY376J
• C-K: ARG681C, ARG782C, ASP67K, CYS1113C, CYS50K, GLN112K, GLU111K, GLU462C, GLU481K, GLU74K, GLU768C, GLY51K, HIS58K, HIS796C, LYS1127C, LYS70K, LYS783C
• D-F: ALA1232D, ARG1236D, ARG1267D, ARG1269D, ARG850F, ARG877F, ASN902F, ASP1218D, ASP805F, ASP841F, ASP897F, ASP901F, GLN1230D, GLU1225D, GLU1227D, HIS1263D, LYS1228D, LYS373D, LYS851F, LYS898F, THR847F
• D-H: ARG681D, ARG782D, ASP67H, CYS1113D, CYS50H, GLN112H, GLU111H, GLU462D, GLU481H, GLU74H, GLU768D, GLY51H, HIS58H, HIS796D, LYS1127D, LYS70H, LYS783D, VAL57H
• D-I: ARG1438D, ARG1449D, ARG377I, ASP1446D, ASP373I, GLU1316D, GLU1442D, GLU1450D, GLY376I, SER386I
• E-F: ARG1173E, ARG1173F, ARG125E, ARG125F, ARG732E, ARG732F, ARG745E, ARG745F, ARG80E, ARG80F, ARG90E, ARG90F, ASN1184F, ASP115E, ASP115F, ASP1180E, ASP1180F, ASP1182E, ASP1182F, ASP1191E, ASP1191F, GLN109E, GLN109F, GLN1189E, GLN1189F, GLU1194E, GLU1194F, GLU129E, GLU87E, GLU87F, GLU94E, GLU94F, GLY63F, HIS64E, HIS64F, VAL1190E, VAL1190F
• E-K: ARG1438E, ARG377K, ASP1446E, ASP373K, GLU1316E, GLU1442E, GLY376K
• E-L: ARG681E, ARG782E, ASP67L, CYS1113E, CYS50L, GLN112L, GLU111L, GLU462E, GLU481L, GLU74L, GLU768E, GLY51L, HIS58L, HIS796E, LYS1127E, LYS70L, LYS783E
• F-G: ARG1438F, ARG1449F, ARG377G, ASP1446F, ASP373G, GLU1316F, GLU1442F, GLU1450F, GLY376G, SER386G
• F-I: ARG681F, ARG782F, ASP67I, CYS1113F, CYS50I, GLN112I, GLU111I, GLU462F, GLU481I, GLU74I, GLU768F, GLY51I, HIS58I, HIS796F, LYS1127F, LYS70I, LYS783F, VAL57I