2VA0

differential regulation of the xylan degrading apparatus of cellvibrio japonicus by a novel two component system

• Total interactions analyzed: 15
• Total true interactions: 9
• Strongest Interaction:
  • Chains: D-E
  • Int. Res.: 42
  • Norm. En. per Res.: -3.0733
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-10.238	-0.763	-168.536	-179.537	68	6	6	6734	0	8	11
A-C	0.0	0.0	-7.5977	-7.5977	13	0	0	492	0	5	2
B-C	-25.9473	-9.5617	-78.539	-114.0479	41	6	0	3564	6	18	34
B-D	-6.9952	1.1612	-22.673	-28.507	18	2	0	1016	0	6	3
C-D	-8.069	-0.82	-158.811	-167.7	66	4	6	6633	0	9	12
C-E	0.0	0.0	-5.7043	-5.7043	14	0	0	443	0	5	2
D-E	-39.4351	-12.6036	-77.0416	-129.0804	42	7	0	3492	6	16	32
D-F	0.0	1.067	-12.1884	-11.1214	17	0	0	769	0	6	2
E-F	-8.6135	0.0	-168.023	-176.6365	67	4	6	6731	0	9	12

Interface residues

• A-B: ALA113A, ALA113B, ALA62A, ALA62B, ARG130A, ARG130B, ARG53A, ARG53B, ARG65A, ARG65B, ARG90A, ARG90B, ASN135A, ASN135B, ASN138A, ASN138B, ASN61A, ASN61B, ASN64A, ASN64B, ASN66A, ASN66B, ASP118A, ASP136A, ASP136B, GLN57A, GLN57B, GLN69A, GLN69B, GLU167B, GLY129A, GLY137A, GLY137B, GLY60A, GLY60B, HIS115A, HIS115B, HIS131A, HIS131B, ILE132A, ILE132B, ILE63A, ILE63B, LEU134A, LEU134B, LEU54A, LEU55A, LEU55B, LYS114A, LYS114B, LYS52A, LYS52B, MET58A, MET58B, PHE56A, PHE56B, PRO116A, PRO116B, SER139A, SER139B, THR112A, THR112B, THR133A, THR133B, TYR117A, TYR117B, VAL59A, VAL59B
• A-C: ARG123C, ARG125C, ARG90A, ASN124C, ASN135A, ASN138A, ASN66A, ASP122C, ASP136A, GLN121C, GLY137A, LYS126C, THR67A
• B-C: ARG110B, ARG110C, ARG123B, ARG123C, ARG125B, ASP118B, ASP118C, ASP122B, ASP122C, ASP47B, GLN121B, GLN121C, GLY103B, GLY103C, HIS115B, HIS115C, LEU107B, LEU107C, LEU111B, LEU111C, LEU127B, LEU127C, LYS114B, LYS114C, LYS119B, LYS119C, LYS52B, LYS52C, PRO102B, PRO109B, PRO109C, PRO116B, PRO116C, THR112B, THR112C, TYR117B, TYR117C, VAL106B, VAL106C, VAL120B, VAL120C
• B-D: ARG123B, ARG125B, ARG65D, ASN124B, ASN135D, ASN138D, ASN66D, ASP122B, ASP136D, GLN121B, GLN68D, GLN69D, GLY137D, LEU134D, LYS119B, LYS126B, THR67D, VAL120B
• C-D: ALA113C, ALA113D, ALA62C, ALA62D, ARG130C, ARG130D, ARG53C, ARG53D, ARG65C, ARG65D, ARG90C, ASN135C, ASN135D, ASN138C, ASN138D, ASN61C, ASN61D, ASN64C, ASN64D, ASN66C, ASN66D, ASP118C, ASP136C, ASP136D, GLN57C, GLN57D, GLN69D, GLY129C, GLY137C, GLY137D, GLY60C, GLY60D, HIS115C, HIS115D, HIS131C, HIS131D, ILE132C, ILE132D, ILE63C, ILE63D, LEU134C, LEU134D, LEU54C, LEU54D, LEU55C, LEU55D, LYS114C, LYS114D, LYS52C, LYS52D, MET58C, MET58D, PHE56C, PHE56D, PRO116C, PRO116D, SER139C, SER139D, THR112C, THR112D, THR133C, THR133D, TYR117C, TYR117D, VAL59C, VAL59D
• C-E: ARG123E, ARG125E, ARG149E, ASN124E, ASN135C, ASN138C, ASN66C, ASP122E, ASP136C, GLN121E, GLN68C, GLY137C, LYS126E, THR67C
• D-E: ALA108E, ARG110D, ARG110E, ARG123D, ARG123E, ARG125D, ARG125E, ASP118D, ASP118E, ASP122D, ASP122E, GLN121D, GLN121E, GLY103D, GLY103E, HIS115D, HIS115E, LEU107D, LEU107E, LEU111D, LEU111E, LEU127D, LEU127E, LYS114D, LYS114E, LYS119D, LYS119E, LYS52D, LYS52E, PRO102D, PRO109D, PRO109E, PRO116D, PRO116E, THR112D, THR112E, TYR117D, TYR117E, VAL106D, VAL106E, VAL120D, VAL120E
• D-F: ARG123D, ARG125D, ARG90F, ASN124D, ASN135F, ASN138F, ASN66F, ASP122D, ASP136F, GLN121D, GLN68F, GLN69F, GLY137F, LEU134F, LYS126D, THR67F, VAL120D
• E-F: ALA113E, ALA113F, ALA62E, ALA62F, ARG130E, ARG130F, ARG53E, ARG53F, ARG65E, ARG65F, ARG90F, ASN135E, ASN135F, ASN138E, ASN138F, ASN61E, ASN61F, ASN64E, ASN64F, ASN66E, ASN66F, ASP118E, ASP136E, ASP136F, GLN57E, GLN57F, GLN69E, GLN69F, GLY129E, GLY137E, GLY137F, GLY60E, GLY60F, HIS115E, HIS115F, HIS131E, HIS131F, ILE132E, ILE132F, ILE63E, ILE63F, LEU134E, LEU134F, LEU54E, LEU54F, LEU55E, LEU55F, LYS114E, LYS114F, LYS52E, LYS52F, MET58E, MET58F, PHE56E, PHE56F, PRO116E, PRO116F, SER139E, SER139F, THR112E, THR112F, THR133E, THR133F, TYR117E, TYR117F, VAL59E, VAL59F