2V46
structure of the ribosome recycling factor bound to the thermus thermophilus 70s ribosome with mrna, asl-phe and trna-fmet (part 1 of 4). this file contains the 30s subunit, mrna, p-site asl, e-site trna and rrf for molecule 1.
Total interactions analyzed 325
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -4.1101
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.0792 -0.0792 6 0 0 41 0 3 4
B-E 0.0 0.0 -0.1206 -0.1206 8 0 0 64 0 0 2
B-H -14.1139 -38.2243 -55.3685 -107.7068 32 2 0 2601 1 15 13
C-D 0.0 0.0 -0.7293 -0.7293 8 0 0 115 0 0 6
C-E 0.0 -31.667 -1.9966 -33.6636 10 2 0 539 2 4 4
C-J -8.1565 6.5412 -72.5651 -74.1803 54 2 2 3341 0 17 28
C-N -9.8796 23.8921 -216.861 -202.8485 74 15 3 9003 0 20 38
D-E 0.0 -27.4723 -28.1963 -55.6686 41 0 0 1775 1 6 8
E-H -16.7331 -43.3911 -106.015 -166.1392 64 12 2 5629 2 40 44
F-O 0.0 0.0 -0.4121 -0.4121 3 0 0 74 0 3 1
F-R -59.3037 -20.1592 -252.879 -332.3419 86 37 10 10097 1 13 19
G-I 0.0 2.892 -32.758 -29.866 37 6 4 2021 0 6 8
G-K 0.0 0.0 -65.7474 -65.7474 26 5 3 2524 0 2 6
H-L 0.0 0.0 -6.6822 -6.6822 8 0 0 531 0 0 1
H-Q -9.436 5.5314 -25.2751 -29.1797 15 4 0 1330 0 1 7
I-J 0.0 -2.1701 -15.8996 -18.0697 19 9 0 1294 0 9 16
I-N 0.0 0.0 -13.0596 -13.0596 7 0 0 453 0 0 0
J-N -22.0409 -23.3604 -180.653 -226.0543 55 27 7 8340 3 15 36
K-R 0.0 -19.0701 -66.0525 -85.1226 33 9 3 2841 1 12 18
L-Q 0.0 0.0 -33.3329 -33.3329 21 5 4 1984 0 0 7
L-Y -6.9773 -34.7976 -13.3285 -55.1034 23 1 0 759 3 15 11
M-S -27.9781 28.294 -84.3967 -84.0808 47 11 2 4459 0 9 23
M-U 0.0 0.0 -2.1295 -2.1295 12 0 0 312 0 3 9
N-S 0.0 0.0 -0.0557 -0.0557 2 0 0 14 0 0 0
O-Q 0.0 -1.1304 -1.2103 -2.3407 14 0 0 195 0 7 6