2UXD
crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna cggg in the context of the thermus thermophilus 30s subunit.
Total interactions analyzed 276
Total true interactions 26
Strongest Interaction Chains J-N
Int. Res. 56
Norm. En. per Res. -5.2011
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.6239 -0.6239 7 0 0 72 0 2 3
B-E 0.0 0.0 -0.0168 -0.0168 2 0 0 12 0 0 2
B-H -16.2019 -38.9766 -70.5677 -125.7462 33 1 0 2864 1 17 17
C-D 0.0 4.0639 -2.4771 1.5869 7 0 0 198 0 0 10
C-E -4.6831 -5.8434 -20.2144 -30.7409 19 2 0 945 2 4 6
C-J 0.0 3.0099 -96.8658 -93.856 57 14 2 3952 0 15 22
C-N -18.6701 5.0451 -200.984 -214.6089 74 10 4 8693 0 19 41
D-E 0.0 -37.2717 -36.451 -73.7227 41 1 0 2096 1 8 12
E-H -29.8985 -47.8862 -142.922 -220.7067 64 15 2 6491 4 40 42
F-O 0.0 0.0 -3.0353 -3.0353 6 2 0 198 0 2 3
F-R -46.826 -45.7984 -246.928 -339.5524 87 34 8 10384 2 12 19
G-I -2.2252 2.5286 -24.6813 -24.3778 35 0 4 1742 0 4 8
G-K 0.0 0.0 -38.8247 -38.8247 24 2 2 1774 0 1 5
G-V 0.0 0.0 -0.0473 -0.0473 2 0 0 20 0 1 0
H-L 0.0 0.0 -10.1739 -10.1739 10 1 0 448 0 0 1
H-Q 0.0 2.3992 -25.8099 -23.4107 14 0 0 1208 0 2 8
I-J 0.0 -0.9564 -29.9529 -30.9093 18 1 0 1313 0 8 16
I-M -4.4182 0.7623 -4.5875 -8.2434 5 0 0 252 0 0 3
I-N 0.0 0.0 -11.6351 -11.6351 8 1 0 544 0 0 0
J-N -36.7203 -46.4184 -208.121 -291.2598 56 31 7 8530 2 13 36
K-R -18.213 -26.4927 -74.1553 -118.861 36 1 2 3326 2 15 16
L-Q 0.0 0.0 -55.1667 -55.1667 21 1 4 2378 0 0 8
M-S 0.0 4.5724 -60.5074 -55.935 41 2 0 3216 0 8 22
M-V 0.0 0.0 -3.3851 -3.3851 10 0 0 381 0 3 10
N-S 0.0 0.0 -0.4212 -0.4212 6 0 0 75 0 0 0
O-Q 0.0 -1.1158 -0.3112 -1.4271 8 0 0 92 0 8 7