2UXC
crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna ucgu in the context of the thermus thermophilus 30s subunit.
Total interactions analyzed 276
Total true interactions 26
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -5.5684
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -6.8306 -6.8306 5 0 0 268 0 1 3
B-E 0.0 0.0 -0.0011 -0.0011 4 0 0 3 0 1 2
B-H -31.1022 -42.9981 -52.0032 -126.1035 33 17 0 2947 2 17 17
C-D 0.0 0.0 -4.6253 -4.6253 7 0 0 205 0 0 8
C-E 0.0 -16.0764 -9.9724 -26.0488 14 2 0 583 1 3 4
C-J 0.0 11.7549 -89.9748 -78.2199 56 4 2 3544 0 14 24
C-N -30.2539 4.5982 -228.725 -254.3808 74 15 3 9424 0 19 38
D-E 0.0 -36.3493 -36.7697 -73.119 38 5 0 1949 3 6 8
E-H -32.3857 -40.8734 -146.323 -219.5821 65 22 2 6761 3 41 43
F-O 0.0 0.0 -1.9221 -1.9221 5 0 0 162 0 2 3
F-R -62.7018 -58.1379 -257.716 -378.5557 89 41 7 10902 6 13 23
G-I 0.0 2.2693 -36.4416 -34.1723 35 2 4 2092 0 5 8
G-K 0.0 0.0 -45.3926 -45.3926 26 4 3 1994 0 1 7
G-U 0.0 0.0 -0.0107 -0.0107 2 0 0 8 0 1 0
H-L 0.0 0.0 -9.5657 -9.5657 10 1 0 434 0 0 1
H-Q 0.0 4.0656 -28.7947 -24.7291 15 1 0 1292 0 2 9
I-J 0.0 -1.163 -33.6451 -34.8081 17 1 0 1383 0 13 16
I-M -5.4252 1.4974 0.3125 -3.6153 6 7 0 518 0 0 3
I-N -11.9292 0.0 -16.8142 -28.7434 8 1 0 559 0 0 0
J-N -33.4407 -45.3307 -227.491 -306.2624 55 23 7 8818 4 14 36
K-R -9.9442 -10.7483 -77.6516 -98.3441 38 8 2 3499 1 14 18
L-Q -6.6349 0.0 -53.1811 -59.816 23 2 4 2323 0 0 7
M-S 0.0 -3.3484 -73.8467 -77.1951 44 2 0 3655 0 8 21
M-U 0.0 1.01 -1.9849 -0.975 9 0 0 292 0 5 9
N-S 0.0 0.0 -0.001 -0.001 5 0 0 3 0 1 0
O-Q 0.0 0.0 -0.272 -0.272 12 0 0 107 0 7 7